Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00555 ATCCATGCTTTTACACTGCTGCAAATTACCAGCAAAAGCTATGACATTTCTCTGCTGCACCGTCTGCCCAATTTTCCCACCATTTTCTTTCCTCTCTGCTTTCCCGGAATCCAAACACTAAATTAATTACTCATACTTCTTTCTCGTCCTTGCATTTCGTTTCGTTTCGTTTCCTTCTATTCTCTTCTGTTCTGTATAGTGTTTGATTCTTGGAGGAAGAACAGAGAATGGGCGGAAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCACATGCAGAGGCCGTCCAATAACTCCATGCATAATCATCTCCGCAAGAGTTCTTGGAATGAGCATTTTCAATTTTCTGATCGGAACGCCGATTCGAGGTCGTTTCTTAGAGGAATCGACGTGAATCGGCTGCCGACGGGCATGGACGGCGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCAAGCATCAGTGGAAAGAGGAGCGAGAGAGAAGCGGTCGGAGATGAGGCAGAGGCTGAAGCGGAAGCGGAGGCGGAGAGAGCATCGTGCTCGCGAGGGAGTGACGATGAAGACGGCGGAGGCGGCGACGGCGACGCCTCGAGAAAGAAGTTGAGGCTATCGAAGGAACAGTCGATGGTACTTGAGGAGACCTTCAAAGAGCACAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGTTGAATCTGAGACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCAAGGACCAAATTGAAGCAAACAGAAGTAGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTAACAGAGGAAAACAGAAGGCTACAGAAGGAGGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCATATGAATCCTCCTACCACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTTTCTTCGTCTTCTTCGACCTCAGCTGCTACGACCACACGCCATCCAGCAGCAGGTGGTGTGCAGCGTCACTCTGTGGCCATCAACCCGTGGGCGGTGTTGCCAATCCAACGTTGATCTGTTTCTTGTGTTTCCTTATGGGGAATTTTGAGTTAATTAATGACTATGGAGGATGGAAAATTTTGTTTTGGAGATGCTGGTAGTGGTTAGGTTTGTTAGCTCTGCCCAATTCTCTCCTTTAATGAATTAAGTTAGATTTTGCGAGTGAGAGAGGGAAGGACAGTGAAATCATATGGTCAAATTAAGATCAATGGAGACCCTTTTCTTTCTCACGGACAA 1304 47.39 MGGRDDELGLSLSLGFGVTTHMQRPSNNSMHNHLRKSSWNEHFQFSDRNADSRSFLRGIDVNRLPTGMDGEEENGVSSPNSTISSISGKRSEREAVGDEAEAEAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSSTSAATTTRHPAAGGVQRHSVAINPWAVLPIQR 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9944280 9946823 - XM_039024505.1 Bhi01g00555 23328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00555 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 2 280 - -
Bhi01g00555 284 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Bhi01g00555 284 SMART halz 187 230 IPR003106 GO:0006355|GO:0043565
Bhi01g00555 284 MobiDBLite consensus disorder prediction 64 132 - -
Bhi01g00555 284 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Bhi01g00555 284 Gene3D - 124 192 - -
Bhi01g00555 284 SMART HOX_1 129 191 IPR001356 GO:0003677
Bhi01g00555 284 MobiDBLite consensus disorder prediction 106 132 - -
Bhi01g00555 284 PANTHER - 2 280 - -
Bhi01g00555 284 SUPERFAMILY Homeodomain-like 117 188 IPR009057 -
Bhi01g00555 284 Coils Coil 193 223 - -
Bhi01g00555 284 MobiDBLite consensus disorder prediction 73 89 - -
Bhi01g00555 284 Pfam HD-ZIP protein N terminus 1 94 IPR006712 GO:0005634
Bhi01g00555 284 CDD homeodomain 131 188 IPR001356 GO:0003677
Bhi01g00555 284 Pfam Homeodomain 131 185 IPR001356 GO:0003677
Bhi01g00555 284 Pfam Homeobox associated leucine zipper 187 221 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00555 Bhi-Chr1:9944280 Bhi11g00049 Bhi-Chr11:975106 1.51E-112 dispersed
Bhi01g00555 Bhi-Chr1:9944280 Bhi09g00593 Bhi-Chr9:12705345 3.99E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53 PF04618 HD-ZIP_N 4.00E-29 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00555 K09338 - csv:101222132 455.677