Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00618 TTAACGATGTGGGCACCGCAGTACCCTATTCTAACTCCACCACTGTCGCTGTTGGTTGGGAGCTGTCTGTCAATGAGTTGCTGATGAATTATCTCTCTTTTTTCCCAGGCACTATAGTCTAATTGTAAATGCAGCGCTCTGTTTTTCCATGGGCAAGAAGGGAGGATCCTCGTGGTTGACGGCCGTCAAAAGGGCTTTTAGATCTCCTTCCAAAGATGAAGATCACAAGAAAACAGAGAAGCGGAGATGGGTTTTCAGGCGATCCACCAATCTGCACGACCCGCCCACCCACCAAACGCCCTCCAACCCATCTTCCGACGCGGCGCTTGCTGTGGCGGTGGCCACTGCCGAAGCTGCAATGGCCACCGCCCAAGCGGCTGTAGAGGTTGTTCGCCTCACCACCAAGCCTTCCAATCACGCCAGAGACCACTACGCTGCAATTCTAATTCAGACTGCTTTTAGAGGATACCTGGCGAGGAGGGCTCTGCGTGCGCTCAAGGGGTTGGTGAAGTTACAGGCTCTTGTGAGGGGTCACAATGTCAGGAAACAGGCTAAGATGACCCTCCGATGCATGCAAGCTCTGGTTCGAGTGCAGGCCCGTGTGCTTGATCAGCGGATGCGGCTCTCTCATGAAGGCACAAGAAATTCCACACTCAGCGACCCTAGTACCGCCCTTGGATCGCGGTACCTTCAATTCTTGTCTGATAGAAAAGAGTTTGCCATGAAGCGTGATCGAAATCTTTCCCAACAGATATGGCGGAGAGGTCGAAGTCCGTCCATGGGCAGCGGAGATGATCTGGAAGAAAGACCCAAGTGGTTGGATCAATGGAATTCAAGGAAACCATGGGAGTGCAGGGGAAGAGCTTCAACCGATCAAAGAGATCCGATCAAAACAGTCGAAATCGACACATTCCAGCCCTACGCTCGCACATCCTCCAACTTCCGAAGAATGGCTCAACATCAACAAAGAACAAACCCGCATTCTGGCAGTTCACCACTCCACCGGACGCAACAAAACGTACCCTCTTTCTACCACTCACCGGCCACACCCTCCCCGTCTAAAACTAGGCCTATGCTGCAAGTCCGGTCTGCAAGCCCTCGTTTCGTGAGAGAGGACACAAGCGAGAATACATCCCAAACACCGAGCTTAAGGTCAAACTACTACTACAGTGGGAATTTGGTCCAACAAGGGAGGAGTGGAGCGAGTAGCAGTTATGGTGGTGAAGGCAACAATTGTTTGCCCAATTACATGGCGGCCACGGAGTCTGCAAAGGCCCGATTAAGGTCGCAGAGCGCGCCGAGGCAAAGGGCGTCAACGCCAGAGAGGGAGAGGGAGAAGGGAGGAATTGGGTATGCGAAGAAACGGCTGTCATTCCCTGTTCCTGATCCAATTGGGCATGGAGTTTTGAGGAGTCCAAGTTTCAAGAGCGTGAGCGGGACGTACTTGGGGATGGAGCAGCAATCCAACTATTCTTCCTGCTGTACTGACAGCCTGGGCGGAGAGATTTCCCCCTCTTCAACTACTGATCTAAGAAGGTGGCTAAGGTGATATTCATTCGTTGATAAAAATTCATGAACGTTGCTGTGTTGCTGCCTCTGAAATTACAAGTTCCTTGTAATCAATCCCCCTAACCCCCCAAAACAGAGTTTCTCAGGAATAGGATGTAACATTATCAAACTAAAGACTGTGTTGTTGTCTCAATTTTGCCAAATTGGTCCATATATAATGCTTCGTGGGATTTGGAAATTGTTTAGTATTTTTAAGTGTAGCTAAAGCTAAAACAGATTCTTGTATTTGGTCTAACAGAAACGTGGTGTGTTTTTGTGTTTGTATTGTTACAATAATTATTCAGCTAATTGATATGACCATTCTTCCA 1877 49.33 MGKKGGSSWLTAVKRAFRSPSKDEDHKKTEKRRWVFRRSTNLHDPPTHQTPSNPSSDAALAVAVATAEAAMATAQAAVEVVRLTTKPSNHARDHYAAILIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRMRLSHEGTRNSTLSDPSTALGSRYLQFLSDRKEFAMKRDRNLSQQIWRRGRSPSMGSGDDLEERPKWLDQWNSRKPWECRGRASTDQRDPIKTVEIDTFQPYARTSSNFRRMAQHQQRTNPHSGSSPLHRTQQNVPSFYHSPATPSPSKTRPMLQVRSASPRFVREDTSENTSQTPSLRSNYYYSGNLVQQGRSGASSSYGGEGNNCLPNYMAATESAKARLRSQSAPRQRASTPEREREKGGIGYAKKRLSFPVPDPIGHGVLRSPSFKSVSGTYLGMEQQSNYSSCCTDSLGGEISPSSTTDLRRWLR 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11070067 11072147 + XM_039049496.1 Bhi01g00618 23391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00618 466 MobiDBLite consensus disorder prediction 267 311 - -
Bhi01g00618 466 MobiDBLite consensus disorder prediction 444 466 - -
Bhi01g00618 466 MobiDBLite consensus disorder prediction 267 338 - -
Bhi01g00618 466 MobiDBLite consensus disorder prediction 17 39 - -
Bhi01g00618 466 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
Bhi01g00618 466 MobiDBLite consensus disorder prediction 1 56 - -
Bhi01g00618 466 MobiDBLite consensus disorder prediction 321 338 - -
Bhi01g00618 466 Pfam Protein of unknown function (DUF4005) 316 425 IPR025064 -
Bhi01g00618 466 Gene3D - 92 144 - -
Bhi01g00618 466 SMART iq_5 92 114 IPR000048 GO:0005515
Bhi01g00618 466 SMART iq_5 115 136 IPR000048 GO:0005515
Bhi01g00618 466 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 174 - -
Bhi01g00618 466 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 184 466 - -
Bhi01g00618 466 MobiDBLite consensus disorder prediction 42 56 - -
Bhi01g00618 466 ProSiteProfiles IQ motif profile. 93 121 IPR000048 GO:0005515
Bhi01g00618 466 MobiDBLite consensus disorder prediction 374 399 - -
Bhi01g00618 466 Pfam IQ calmodulin-binding motif 120 136 IPR000048 GO:0005515
Bhi01g00618 466 Pfam IQ calmodulin-binding motif 96 114 IPR000048 GO:0005515
Bhi01g00618 466 PANTHER IQ-DOMAIN 5-RELATED 1 174 - -
Bhi01g00618 466 PANTHER IQ-DOMAIN 5-RELATED 184 466 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00618 - - - csv:101221270 830.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00618 Bhi-Chr1:11070067 Bhi12g02232 Bhi-Chr12:71569888 6.21E-154 dispersed
Bhi12g00643 Bhi-Chr12:19629107 Bhi01g00618 Bhi-Chr1:11070067 3.14E-29 dispersed
Bhi01g00618 Bhi-Chr1:11070067 Bhi01g01353 Bhi-Chr1:27167088 3.09E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00669 . 1 479 IQD Protein Family AT3G52290 54.2 5.3e-102 369.0
Bhi06g00668 . 1 479 IQD Protein Family AT3G52290 54.2 5.3e-102 369.0
Bhi02g01384 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi02g01383 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi02g01385 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi09g03139 . 1 438 IQD Protein Family AT2G26180 61.6 9.3e-120 427.9
Bhi03g00330 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00327 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00326 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00329 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00328 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00324 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi03g00323 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi03g00325 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi01g03276 . 83 266 IQD Protein Family AT2G33990 53.5 1.6e-48 190.7
Bhi01g03276 . 86 259 IQD Protein Family AT3G15050 62.7 8.5e-55 211.5
Bhi03g00330 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00327 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00326 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00329 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00328 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00324 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00323 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00325 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi12g01121 . 124 476 IQD Protein Family AT5G13460 52.1 9.4e-78 288.5
Bhi12g02233 . 1 508 IQD Protein Family AT4G00820 51.3 2.8e-113 406.8
Bhi12g02232 . 1 509 IQD Protein Family AT4G00820 51.2 3.7e-113 406.4
Bhi01g00618 . 1 466 IQD Protein Family AT4G00820 50.5 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00618 Bhi_Chr01 FPKM 1.137432 0.89302 38.041691 38.340267 33.616047 34.18568 33.022583 0.977099 0.599337 1.02091