Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00711 CCCTCTCCGGCCACCGTCGATCAAAACCTGTCACCCCCCCTTTTCACTTACTTTACTACCCATTTTAGTTCAGCTTTCAGTTTTATAGCTCGCATGGCCACCTCTGTAAAGGGCCTCTTAAAAGGATTAAGATACATTTCACAGATTTTCGATGAAAAAGAACCAGAAATGCAGATTGGTCTTCCCACTGATGTTAAGCATGTTGCTCATATTGGATGGGATGGTCCATCTGGGAATCAAAACAATACACCTAGTTGGATGAACGAGTTTAAATCTTCACCAAAAACTCAAACCTCAGGCGATTTGGTTAATTCTATTGGGGAACTTGATCTTTCTTCTGCTAATATCCCCATTCAAGAGTCTGGGGAGCTAGATGTTCATAAGGCAAGTCGAGCACCAAGGTCGAAACGCCAAACTTCGTCAGAGTCTTCATCAGGTTTAGACTCTTCATCTGCTCGGCGGAACTCTGAGAAGGGCTCTAGACGACAACGTTCATCGTGCCCTTCAGCTGACTCTGGCCCTCAGGAAGGTAGTTCTCGAAGTTCACGACGTCGTCGTGGTTCAAATCATGGAGCTGAATCAAGCACAGAAAATCCTATCCCCAAACACTCGCATCGGAGGAAATCTAAGGGGTCGTCCGACAGTAGTGAATCAACGAAATCATCTAGATCAGGAGACAATAACTCTTTAGCAGACATACCTCTCCCAGTTTTGGAAGCAGTGGATGAAGAGAAAGGATGAGCAGAATTCCAAACAAGGAACTAAACAGCATTCTACTTGGGCTGGCTGCTTCAAATGGTTCCTTGCC 808 45.3 MATSVKGLLKGLRYISQIFDEKEPEMQIGLPTDVKHVAHIGWDGPSGNQNNTPSWMNEFKSSPKTQTSGDLVNSIGELDLSSANIPIQESGELDVHKASRAPRSKRQTSSESSSGLDSSSARRNSEKGSRRQRSSCPSADSGPQEGSSRSSRRRRGSNHGAESSTENPIPKHSHRRKSKGSSDSSESTKSSRSGDNNSLADIPLPVLEAVDEEKG 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13259123 13260265 - XM_039044078.1 Bhi01g00711 23484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00711 215 MobiDBLite consensus disorder prediction 44 72 - -
Bhi01g00711 215 Pfam P21-Rho-binding domain 27 62 IPR000095 -
Bhi01g00711 215 MobiDBLite consensus disorder prediction 105 122 - -
Bhi01g00711 215 CDD CRIB 26 62 - -
Bhi01g00711 215 MobiDBLite consensus disorder prediction 39 72 - -
Bhi01g00711 215 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 1 213 IPR044510 -
Bhi01g00711 215 MobiDBLite consensus disorder prediction 184 198 - -
Bhi01g00711 215 Gene3D CRIB domain 24 69 IPR036936 -
Bhi01g00711 215 SMART PBD_5 28 62 IPR000095 -
Bhi01g00711 215 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 1 213 - -
Bhi01g00711 215 MobiDBLite consensus disorder prediction 131 146 - -
Bhi01g00711 215 MobiDBLite consensus disorder prediction 87 215 - -
Bhi01g00711 215 ProSiteProfiles CRIB domain profile. 28 41 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00711 - - - bhj:120087163 335.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00711 Bhi-Chr1:13259123 Bhi05g00204 Bhi-Chr5:3791860 1.51E-27 dispersed
Bhi01g00711 Bhi-Chr1:13259123 Bhi01g00712 Bhi-Chr1:13259123 1.46E-146 tandem
Bhi01g00711 Bhi-Chr1:13259123 Bhi05g00203 Bhi-Chr5:3791860 1.51E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00711 Bhi_Chr01 FPKM 31.139698 33.972321 47.964611 49.231716 10.296117 8.579375 10.625112 35.145187 34.621128 29.536963