Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00724 CCACTTCATGATCGACGATATTTTTTCTCGGGCCCCCTACAATCGGTCTCCGTCACAGAAGCTTCTTTGGTTTTTCGTAAGGTTTCCTCAGAAAATCCAGGAACGACATATCGTGCGAAATTCCATTGAAATTCATTCTCAGAAACAGGGTAGGGCTGGGAGTTTGGGCTGCTCCCATTGCTGCGGAGGGGTCTTGAATTGAATTTTCCAGGGAGATTTTCAGGCCAAATTCGGGTTTTTCTTTCAGCCCTGATTAAACTTGTTAGATTAATTTTTGTGGGTCGTACTGAAATGGGGCAACAACAATCGAAAGATGAATTGTTGTACCAGCAAGTTAGCTATGGAAACACAGAAGGGATTAAAGCCCTTTGCCGAGAGGGTGCAGGCCTTGAGTGGATTGATAAGGAGGCGAAAACCCCTTTGATTGTGGCCTGCATGAGTCCTGAGCTTCACAATGTTGCGAGAACTTTGATAGAACTTGGTGCTAATGTTAATGCGTATCGGCCTGGGCGTCATGCTGGCACTCCTTTACATCATGCAGCTAAAAGAGGTCTTGAAAATAATGTCAAGTTACTCCTTTCTCATGGAGCAAATCCTTTGATCATAAATGATGATTGTCAAAGTCCTCTTGATGTTGCTAGAGCAAAAGGTCATAGCAATGTAGTTCGAACAATCGAGAGTCATATTTGTTTGTTCTCGGGTTGGTTGCGGGAATTTTATGGACCAGGATTTTTGGAACTACTGGCTCCTCAATTGGTCTCAAGGAAAGTTTGGGCTGTTATTTTACCATGTGGGGCGAGAAACCTTACAAAGCCTTTCAAGCTGGAGCTTGCAATCTACGCAACTCTACAGGATGCTCAACCACGTATTGTTGTTCCACTGTGGCGAGCCGATTTGGAGGAGACAAAGTTACAGCATTCTGATCCATCGGTTATGATTGTGGATAATGCCGCAAAAACTCGCTTGAAACTTGCTTCTGGGAATGAAAATGACAAGGAACAACTTCAGTGGTTTTGCAATGCATGCAAAGGAATTCCTTCGATGATGCACCCGACATTTATGAATGGTACCCATGGTTCGGGTGTTTCGGCAACTGCACCACTGGACTCAGAAGATGTGGAGCTAGCCATGGCGATTAATGCTTCCATCCAGTCAGCTATCCATGGGAGACCACCCATTCCTGATCCCCATCCAAGTTCTGAAGCAAGTACCTCTAGTAGCCATACAGGTCCAGTTGAACCGACAACACATCCTACAAAGTTAGTCACTGAAGAATCAGAAGTGCATGAAGCTGGCCAGAGCAGCACTTCAAACGAACATCCTCAAATCCAGATTAACAGTATCCCTCCAGATGCTGTACCTTCAGCTCCATTGGCAGCAGATGAGATTCTGGACGATGGTGTGATTCACTATCCTTCGATCGATTCAAGTCCAATTGAGTTATCTCAAACTGCTCAGAACGGTCCCTTACAAGCGGGTGAAGGAAAAGAGGAAACAAGTTCTTCGTCCTGTATCATATGCTTGGATGCCCCTATTCAAGGAGCCTGCATTCCATGTGGACATATGGCTGGGTGCATGGATTGCTTGACCGAAATCAAGTCCAAGAAATGGGGTTGCCCTGTTTGTCGCGCCAAAATTGACCAGGTTGTCAGATTGTATGCTGTATGAGTCCGGAACGGTGAATTATACTGTGAGTAAACTCTTTAAATGTACAGTTCCTGTTTATATAATTTTCAAGATATATAAACCAATGTATTTTATCTGATTGGGTGGACACAAGAGGTAATGTAATTTGAATACAATTTATCAATATCCCTTAAACAGCGCAGATATTCTTGAAGCCCCAA 1847 44.07 MGQQQSKDELLYQQVSYGNTEGIKALCREGAGLEWIDKEAKTPLIVACMSPELHNVARTLIELGANVNAYRPGRHAGTPLHHAAKRGLENNVKLLLSHGANPLIINDDCQSPLDVARAKGHSNVVRTIESHICLFSGWLREFYGPGFLELLAPQLVSRKVWAVILPCGARNLTKPFKLELAIYATLQDAQPRIVVPLWRADLEETKLQHSDPSVMIVDNAAKTRLKLASGNENDKEQLQWFCNACKGIPSMMHPTFMNGTHGSGVSATAPLDSEDVELAMAINASIQSAIHGRPPIPDPHPSSEASTSSSHTGPVEPTTHPTKLVTEESEVHEAGQSSTSNEHPQIQINSIPPDAVPSAPLAADEILDDGVIHYPSIDSSPIELSQTAQNGPLQAGEGKEETSSSSCIICLDAPIQGACIPCGHMAGCMDCLTEIKSKKWGCPVCRAKIDQVVRLYAV 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13450627 13456421 - XM_039045712.1 Bhi01g00724 23497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00724 458 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Bhi01g00724 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 458 IPR013083 -
Bhi01g00724 458 SUPERFAMILY RING/U-box 400 452 - -
Bhi01g00724 458 MobiDBLite consensus disorder prediction 290 357 - -
Bhi01g00724 458 MobiDBLite consensus disorder prediction 302 322 - -
Bhi01g00724 458 MobiDBLite consensus disorder prediction 331 352 - -
Bhi01g00724 458 Pfam Zinc finger, C3HC4 type (RING finger) 405 452 - -
Bhi01g00724 458 ProSiteProfiles Zinc finger RING-type profile. 407 446 IPR001841 -
Bhi01g00724 458 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Bhi01g00724 458 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Bhi01g00724 458 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 458 - -
Bhi01g00724 458 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Bhi01g00724 458 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Bhi01g00724 458 PANTHER ROLLING PEBBLES, ISOFORM B 1 458 - -
Bhi01g00724 458 Gene3D - 2 135 IPR036770 -
Bhi01g00724 458 SMART ANK_2a 75 104 IPR002110 GO:0005515
Bhi01g00724 458 SMART ANK_2a 39 69 IPR002110 GO:0005515
Bhi01g00724 458 SMART ANK_2a 108 137 IPR002110 GO:0005515
Bhi01g00724 458 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00724 - - - csv:101208364 827.009
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi01g00724 Bhi12g01631 CCT
Bhi01g00724 Bhi12g01631 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00724 Bhi-Chr1:13450627 Bhi01g00726 Bhi-Chr1:13450627 0 dispersed
Bhi09g01016 Bhi-Chr9:23254282 Bhi01g00724 Bhi-Chr1:13450627 2.98E-06 dispersed
Bhi01g00724 Bhi-Chr1:13450627 Bhi01g00725 Bhi-Chr1:13450627 0 tandem
Bhi01g00859 Bhi-Chr1:16256077 Bhi01g00724 Bhi-Chr1:13450627 2.18E-07 transposed
Bhi01g00724 Bhi-Chr1:13450627 Bhi12g01615 Bhi-Chr12:52195931 1.26E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g675 . Blo12g00365 Bda03g00843 Bda08g00272 Bpe04g00797 Bpe14g01246 . Bma05g01069 Cmo08g01063 . Cma06g01331 Cma14g01808 Car06g01142 Car14g01624 . Cpe08g00329 Cpe03g01512 Bhi01g00724 . . . . . . Cla06g00656 Cam06g0701 Cec06g0706 Cco06g0714 Clacu06g0689 Cmu06g0680 Cre06g1449 . . Cone7ag0317 Cone4ag0322 Lsi05g01724 Csa02g01072 Chy05g00332 Cme06g00502 . Blo07g00256 Bda11g00626 Bda13g00070 Bpe05g00860 Bpe13g00562 Bma02g00791 . Sed02g1402 Cmo06g01335 Cmo14g01844 Cma08g01087 Cma17g00168 Car08g00962 Car17g00147 . Cpe17g00191 Bhi12g01631 Tan06g2419 Cmetu06g0922 Lac12g2186 Hepe03g0273 . Lcy13g0366 Cla05g00453 Cam05g0494 Cec05g0503 Cco05g0502 Clacu05g0489 Cmu05g0466 Cre05g0529 Lsi09g01241 Csa03g01218 Chy06g00481 Cme05g00555
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00724 Bhi_Chr01 FPKM 0.0 0.0 3.136503 4.004098 5.026667 5.762676 7.172182 0.0 0.210931 0.0