Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00738 GATCAAAATCAGTCCTTTTGATTGGCTGACTACCACGTTGACTTGACTACTCTTCTTTCCTTTCCTTTCTTCGGTTGCGGCTTTGCCACAATAAAATGCATTTATAAAAACCACACTACAAATCGAAACCCAAAACTCAGAAATAAACAAAATTAAATTTTATTAAAATGGAACCCCCTATCCGCCATAGCTCCTCTGCTCTCTTTCTCTTCTTCATCATCTTCTTCTTCTTCCATCACTCCGCCGCCCAAGCCCCCGACGCCGATGGCTACACCTGCTCCGCCAACCAGACTGCCACCCCATGCCAGGCCTACGTCTTCTACCGAGCCGCCGCCCCCAATTTCCTCGACTTGGCTGCCATTGCTGACCTCTTCTGGGTCAGCCGCCTTGAAATTTCCCGTCCCAGCAACATCTCCGACTCCAACGCCACTTTCCCCCTCCTCGACGGGCAGTCCCTCTTCATTCCCATCACTTGCTCCTGCCACTCCGTCAACGCCTCCGTCAGCATCTCTTACGCCAATCTCTCCTACAAAATCAACGTCGGCGACAATTTCTGGCTTGTCTCCACCTCCAAGTTTCAGAATCTCACCACTTTCCAATCCGTCGAAATCGTCAATCCCACTTTAATCGCAACTAATCTCTCCATCGGTGTCGACGTCGTTTTCCCCATCTTCTGCAAGTGCCCTAATCCCACCCAACTCCGAAATCGCGTCAATTTCATGGTCTCTTACGTGATTCGGCCTGCCGACACTCTGGCTTCCATAGCTTCAAGGTTTGGAGTACAAACATCGGATATCACAGCCGCGAATCGGCCCAATCCGCAGACATTCGAGACGATTTTCATCCCGGTGAGTCGTCTGCCCAATTTGACGCAGCCCATTGTGTTGCCGCCGTCTCCAGAGCAGGCGCCGGCTCCGGTTGAAGAAGGGAAAAACAGAGCAGTGACAGGGCTGGCGATTGGGATGGGGATTGTTGGGTTTTTGCTGATCTTACTGGTGGGTTTGTGGGTTTGTGGAGTGGGGAAGAGGAGGAGGGGGAAGGAGAGGGAAATGGAGGAGGGATATGAGAAACAGAGAGTGCAGGATATTGGGATTTGGAAAGGGAAAGGGAAGGAAATGGAGGTGGATTTAATGGCGGATGTGTCCGATTGTTTGGATAAATACAGAGTTTTCAAAATTGAGGAGCTTAATGAAGCGACGGATGGATTCAGCGAGAGTAGCTTGATTCAAGGATCGGTTTATAAGGGGAGCATCGGCGGAGTTGAATATGCTATCAAGAAGATGAAGTGGAATGCCTATGAACAGCTCAAGATCTTGCAGAAGGTAAACCATGGTAATCTAGTGAAGCTTGAAGGCTTTTGCATTGACCCTGAAGATGCAACCTGCTACCTAATTTATGAATATGTAGAGAATGGTTCGCTTTATTCATGGCTACATGGAAGCCAAAATCAGAAACTAAACTGGAGAATGAGATTGAGGATTGCGATCGATGTGGCTAACGGACTACTATACATCCATGAGCACACGAGGCCGCAAGTCGTTCACAAAGACATAAAAAGCAGCAACATTCTGCTGGATGCAAACATGAGGGCTAAGATAGCCAACTTTGGGTTGGCAAAGTCAGGATGCAATGCCATAACCATGCACATTGTTGGAACTCAAGGCTATATAGCACCCGAATACATAGCTGATGGAGTCGTGTCGACAAAGATGGACATCTTCTCGTTTGGAGTTGTTCTGCTTGAGCTGATCTCTGGGAGGGAGGCCATTGACAACGAAGGAGGGGTTCTATGGATGAGAGCCAGTACTGAATTTTTAGAAGGGAAGGAGAAGGATAAGTTGGAAAGTTTGAAGAGTTGGATTGATGAAGCTCTTTTCAAGCAATCGTGCCCGATGGAGAGTTTGATGGATGTGATGAATGTGGCTGTCAGTTGCTTGCAGAAGGACCCAACGAAGAGGCCAAGCATGGTCGAGGTGGTTTATGCCCTAAGCAAGACCGATGACGCCGTGTTCGATTTCTCTGATGATAATTTATCAGCTCCTCCCTTGGCAGCTAGATAGCCAAACTATAGTCAGTTCAGTTTCCTGCCTATACAAAAAGGACAAGCATGTTGTATGTATTATTATCGTAATCAGAGGCATAAACAGTGTACTTTCTATATCAAAGGCTAGCTTGCAATAAAGTTTATGTATATATACATTTGAATAAGTTTTTGATTTAGTTTTTGTACAAGACTTTA 2239 46.81 MEPPIRHSSSALFLFFIIFFFFHHSAAQAPDADGYTCSANQTATPCQAYVFYRAAAPNFLDLAAIADLFWVSRLEISRPSNISDSNATFPLLDGQSLFIPITCSCHSVNASVSISYANLSYKINVGDNFWLVSTSKFQNLTTFQSVEIVNPTLIATNLSIGVDVVFPIFCKCPNPTQLRNRVNFMVSYVIRPADTLASIASRFGVQTSDITAANRPNPQTFETIFIPVSRLPNLTQPIVLPPSPEQAPAPVEEGKNRAVTGLAIGMGIVGFLLILLVGLWVCGVGKRRRGKEREMEEGYEKQRVQDIGIWKGKGKEMEVDLMADVSDCLDKYRVFKIEELNEATDGFSESSLIQGSVYKGSIGGVEYAIKKMKWNAYEQLKILQKVNHGNLVKLEGFCIDPEDATCYLIYEYVENGSLYSWLHGSQNQKLNWRMRLRIAIDVANGLLYIHEHTRPQVVHKDIKSSNILLDANMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFSFGVVLLELISGREAIDNEGGVLWMRASTEFLEGKEKDKLESLKSWIDEALFKQSCPMESLMDVMNVAVSCLQKDPTKRPSMVEVVYALSKTDDAVFDFSDDNLSAPPLAAR 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13842020 13847126 - XM_039041767.1 Bhi01g00738 23511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00738 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 11 623 - -
Bhi01g00738 630 SUPERFAMILY Protein kinase-like (PK-like) 331 607 IPR011009 -
Bhi01g00738 630 Gene3D LysM domain 178 233 IPR036779 -
Bhi01g00738 630 ProSiteProfiles Protein kinase domain profile. 305 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi01g00738 630 SMART serkin_6 347 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi01g00738 630 Pfam Protein kinase domain 369 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi01g00738 630 Gene3D Transferase(Phosphotransferase) domain 1 413 621 - -
Bhi01g00738 630 PANTHER - 11 623 - -
Bhi01g00738 630 Gene3D Phosphorylase Kinase; domain 1 317 412 - -
Bhi01g00738 630 CDD LysM 186 215 IPR018392 -
Bhi01g00738 630 Pfam LysM domain 188 219 IPR018392 -
Bhi01g00738 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Bhi01g00738 630 ProSiteProfiles LysM domain profile. 186 232 IPR018392 -
Bhi01g00738 630 SUPERFAMILY LysM domain 186 220 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00738 - - - cmo:103483654 1098.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00738 Bhi-Chr1:13842020 Bhi10g02194 Bhi-Chr10:55888664 6.26E-107 dispersed
Bhi01g00738 Bhi-Chr1:13842020 Bhi03g01957 Bhi-Chr3:41400548 1.57E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g597 . . . . . Bpe14g01221 . . . . Cma06g01349 Cma14g01771 Car06g01170 Car14g01593 . Cpe08g00302 . Bhi01g00738 . . . . . Lcy11g1602 . . . . . . . . . Cone7ag0290 . Lsi05g01658 . . Cme06g00553 Blo02g00600 Blo07g00240 Bda11g00607 . . . . . . Cmo06g01362 Cmo14g01807 . . . . . . . . . . . . . Cla05g00493 . . . . . . . Csa03g01270 Chy06g00523 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008192 1 1 2 0 1 1 2 1 1 1 0 1 4 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87293 PF00069 Pkinase 6.50E-39 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00738 Bhi_Chr01 FPKM 7.952111 8.702861 17.72378 17.004301 25.964504 27.061398 23.826111 15.245599 13.712877 13.12724