Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00780 AATCATTAAAGAAAGTTGTCTTTTGAATTTAAGTTTAATATTTTAATAAGTTGAATTATATTGAATGGAATTGAAGATCATGACAATACTAGATAAATTTGAGATAAAATCGAAACAAAAAAGGGCAAAATGAAGCTTGCTGTTGCTGCCGAGTTAAAATTGCTCCGAGTTGTAATCGTTCATTCAAAGCAAAGTGGATAGCCGCACAGTGCAACAAACAACTCCATTAATGGCGGCAAATCTTTATCCAACCATCTCCATCACGCCGAATTTCATCATACCCACCACTCGGAATGACTCAAAGCATACCCCTCCCCACCAGTTGTTCAAAAATTGCAAAACCATGGATGAACTTGAACAATTACACTGTTACGCGTTGAAGCTGGGTCTCATTCGCAAACAATCGATTGTAAGTAAGCTTATTTCCACTTGCGTGGAAATGGGCACTTCAGAAAGCTTGGATTATGCTCGAAAGGCGTTCGAGCTCTTCCAGGAAGACGGGGAAGCAAATGCCACTGTTTTCATGTACAATTCGTTAATCAGAGGATACTCTGCTGCAGGGCTTTGTGATGAAGCTATTTCGCTGTATGTTCAGATGATCGAGGTTGGGTTTATGCCAGACAACTTCACGTTTCCATTTGTATTAAGTGTATGTGCTAAGACTGGTGCGTTTGTGGAAGGGGTTCAGCTCCATGGAGCTCTAATGAAGATTGGTTTAGAGAGAGATATGTTTGTTGCTAATTCTCTGATACATCTATATGCGGAAGGGGGAGACTTTTTGTTTGCTCGAAAGGTGTTTGATGAAATGCTTGAGAGAAATGTTGTTTCATGGACCAGCTTGATTTGTGGTTATGCTAGGACAGATTCTTCTAGAGAGGCTGTGGCTTTGTTTTTCCAAATGATCGAGGCAGGTGTTAGACCCAATTCTGTCACAATGGTGTGTGTGATATCAGCTTGTGCCAAGTTGAAAGATCTTGAACTAGCCAAGAGAATTCATGCTTACATTGAAGAGTCAGGAATGGAGCTTAATACTCATATGGTGAATGCACTTGTGGATATGTACATGAAATGTGGAGAAACTGGTGGTGCAAAGCGACTATATGACGGATGTGTTGATAAGAATTTGGTTTTATGTAACACAATCATGTCGAATTATTCACATCATGGTATGCCGAACGAGGTACTTACTGTCTTGGTAGATATGTTCCGAGTTGATCTTCAGCCGGATAGAATTTCGTTGTTATCGGCTATCTCGGCATGTGGGCAGATGGGTGACTATCTACTTGGAAAGTGCTGCCACAATTATTCTCTAAGAAATGGGTACGAAGGTTGGGATAACATTCGCAATGCAATAATTGACATGTATATGAAGTGTGGAAAACAAGAAATTGCCTACAGAGTTTTTGACAGTATGTCAAATAAGTCCATTGTATCGTGGAACTCGTTACTCGTTGGTTACATTAGAAACAAAGATTTAGAGTCAGCTAGGAAGATATTCAATGAGATGCCTGAGAAGGATATAGTGTCTTGGAACACAATGATTAATGCTTTGGTTCAAGAGAGTATGTTTGATGAAGCAATTGAATTGTTCCGAGAGATGCAACTAAAGGAAATGAAAGCAGACAGGGTGACAATGGTAGAAGTTGCATCGGCATGTGGATATCTTGGAGATCTCGAACTCGCGAAGTGGATATATGCGTATATTGTAAAGAACAGTATCTACTGTGATATGTTGCTTGAGACAGCAGTAGTTGATATGTTTGCTAGGTGTGGTGACACTTATAGCGCGATGAAAGTGTTCAACAATATGGATAAAAAAGACATCTCAGCGTGGACAACAGCCATTGGAGCAATGGCTGTGGATGGGAATGGCAAACGAGCTATAGAACTTTATAGTGAGATGCTAAAGCAAGGGGTGAAACCAGATCAAGTAGTTTTTGTAAACATATTAACAGCTTGTAGCCATGGTGGTTTTGTGGAACAAGGGCAGCGCATATTTGAGTCAATGAAGCAACATGGAATCTCTCCACAAATTGTACATTATGGTTGCATGGTTGATCTATTAGGTCGAGCAGGTAAGTTAGAAGAAGCTCTAGATATTATAAAGAGCATGCCAATGAAACCCAATGGGATTATATGGGGATCTCTATTGGCTGCATGCCGTACTCACAAAAATATTGATATGGCGACATTCGCAGCTGAAAGGTTAGCAAAAGTGGCTCCAGAAAGGACTGGGACTCATGTGCTTCTATCAAACATATATGCTTCAGCTAAAAAGTGGGCTGATGTTGCCAATGTGAGGCTACAATTGAAGGAGAAAGGAGTTCAAAAAATGCCTGGTTCAAGCTCGATACAAGTTGATGGAGTTATTCATGAGTTTACTTCAGGTGACAGATCACACCCAGAAAACTATGGGATTGACATGATGTTAAAAGAAATTAACATCAAGCTTGGGGTTGCCGGCTATGTTCCTGATACAACTAATGTTCTTCTTGACGTAAATGAGCAGGAAAAACAATATCTACTCAATCGGCATAGCGAGAAGCTGGCCATGGCTTACGGGCTTATAAGTACAGAAAAGTATGTACCAATTCGAGTTATAAAGAATCTCCGAATGTGCTCTGACTGTCACGCATTTGCCAAATACATTTCAGAAGTGTATGAAAGGGAAATAACAGTACGAGACAATAATAGGTTTCACTTCTTTCGGCAAGGGTCTTGTTCATGTGGTGATTATTGGTAATATATTTCACAGATAGGAAAGAACTGTAAGATAAAATATGCATCTTCAATATTGATTTACATTCATTCTTTGCTAAAAAGGTAAATCTAGTCAACTAGTGAACAGACAGATGGCAACAATGGACTAAGCAATGCTGGAGCTTCTTCCCTGTCAGTTGATAAGAAACCTACACATTGAAGTGCAATGTAACAAAAGACCTATGCTGTTTCTATTACAATTCACATTATCACCGACATGTTAGCCTTTTAGAGA 2995 39.63 MAANLYPTISITPNFIIPTTRNDSKHTPPHQLFKNCKTMDELEQLHCYALKLGLIRKQSIVSKLISTCVEMGTSESLDYARKAFELFQEDGEANATVFMYNSLIRGYSAAGLCDEAISLYVQMIEVGFMPDNFTFPFVLSVCAKTGAFVEGVQLHGALMKIGLERDMFVANSLIHLYAEGGDFLFARKVFDEMLERNVVSWTSLICGYARTDSSREAVALFFQMIEAGVRPNSVTMVCVISACAKLKDLELAKRIHAYIEESGMELNTHMVNALVDMYMKCGETGGAKRLYDGCVDKNLVLCNTIMSNYSHHGMPNEVLTVLVDMFRVDLQPDRISLLSAISACGQMGDYLLGKCCHNYSLRNGYEGWDNIRNAIIDMYMKCGKQEIAYRVFDSMSNKSIVSWNSLLVGYIRNKDLESARKIFNEMPEKDIVSWNTMINALVQESMFDEAIELFREMQLKEMKADRVTMVEVASACGYLGDLELAKWIYAYIVKNSIYCDMLLETAVVDMFARCGDTYSAMKVFNNMDKKDISAWTTAIGAMAVDGNGKRAIELYSEMLKQGVKPDQVVFVNILTACSHGGFVEQGQRIFESMKQHGISPQIVHYGCMVDLLGRAGKLEEALDIIKSMPMKPNGIIWGSLLAACRTHKNIDMATFAAERLAKVAPERTGTHVLLSNIYASAKKWADVANVRLQLKEKGVQKMPGSSSIQVDGVIHEFTSGDRSHPENYGIDMMLKEINIKLGVAGYVPDTTNVLLDVNEQEKQYLLNRHSEKLAMAYGLISTEKYVPIRVIKNLRMCSDCHAFAKYISEVYEREITVRDNNRFHFFRQGSCSCGDYW 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14700092 14703086 + XM_039022007.1 Bhi01g00780 23553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00780 837 Gene3D Tetratricopeptide repeat domain 33 154 IPR011990 GO:0005515
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Bhi01g00780 837 Pfam PPR repeat 300 327 IPR002885 -
Bhi01g00780 837 Pfam PPR repeat 505 532 IPR002885 -
Bhi01g00780 837 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 227 327 - -
Bhi01g00780 837 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 59 228 - -
Bhi01g00780 837 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 323 811 - -
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 399 429 IPR002885 -
Bhi01g00780 837 Pfam DYW family of nucleic acid deaminases 745 837 IPR032867 GO:0008270
Bhi01g00780 837 Gene3D Tetratricopeptide repeat domain 249 366 IPR011990 GO:0005515
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Bhi01g00780 837 SUPERFAMILY TPR-like 398 494 IPR011990 GO:0005515
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Bhi01g00780 837 Gene3D Tetratricopeptide repeat domain 155 248 IPR011990 GO:0005515
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 566 600 IPR002885 -
Bhi01g00780 837 Pfam PPR repeat family 196 245 IPR002885 -
Bhi01g00780 837 Pfam PPR repeat family 96 144 IPR002885 -
Bhi01g00780 837 Pfam PPR repeat family 429 469 IPR002885 -
Bhi01g00780 837 Pfam Pentatricopeptide repeat domain 554 613 IPR002885 -
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Bhi01g00780 837 Gene3D Tetratricopeptide repeat domain 507 720 IPR011990 GO:0005515
Bhi01g00780 837 Gene3D Tetratricopeptide repeat domain 371 506 IPR011990 GO:0005515
Bhi01g00780 837 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 59 228 - -
Bhi01g00780 837 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 323 811 - -
Bhi01g00780 837 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 227 327 - -
Bhi01g00780 837 TIGRFAM PPR: pentatricopeptide repeat domain 401 432 IPR002885 -
Bhi01g00780 837 TIGRFAM PPR: pentatricopeptide repeat domain 534 566 IPR002885 -
Bhi01g00780 837 TIGRFAM PPR: pentatricopeptide repeat domain 604 628 IPR002885 -
Bhi01g00780 837 TIGRFAM PPR: pentatricopeptide repeat domain 99 131 IPR002885 -
Bhi01g00780 837 TIGRFAM PPR: pentatricopeptide repeat domain 199 232 IPR002885 -
Bhi01g00780 837 TIGRFAM PPR: pentatricopeptide repeat domain 432 465 IPR002885 -
Bhi01g00780 837 TIGRFAM PPR: pentatricopeptide repeat domain 171 199 IPR002885 -
Bhi01g00780 837 TIGRFAM PPR: pentatricopeptide repeat domain 300 333 IPR002885 -
Bhi01g00780 837 Pfam E motif 647 709 IPR046848 -
Bhi01g00780 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 531 565 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00780 - - - csv:105434834 1505.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00780 Bhi-Chr1:14700092 Bhi01g01789 Bhi-Chr1:38146354 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g536 . . . . . . . . . . Cma06g01391 . Car06g01200 . . . . Bhi01g00780 . . . . . . . . . . . . . . . . Cone4ag0258 . . . Cme06g00589 . . . . . Bpe13g00595 . . . Cmo06g01396 . . . . . . . . . . . . . . Cla05g00520 . . . . . . . . Chy06g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013750 0 1 0 0 1 1 2 0 1 1 1 1 1 1 0 1 1 1 0 1 0 0 1 1 1 0 1 1 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00780 Bhi_Chr01 FPKM 33.768242 36.833237 35.996113 36.45364 48.969101 54.133976 56.347523 49.785919 49.752949 45.151657