Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00782 GAGCCTCAAAATTTGATCCACCCGTACGGAATTCCCCAATATTTTTGGCAAGGCCGGCAACACTAAAAAGATGGGGAAAATGCTTTGTCTCGGATCGAACCAACCGGTAGGGTTTGAGTTTTAAAAATTGTGGGAATGTCTCGTCTCCGTTCTGCTGAGAGCCTGAGATGGGCGGCGCTCCTCCAAATTTCCGTGACTAAACCCTCTCGCCTCCACTGAACTCATGTATGATATATATATATTTATACACATGTACTCTATTCTTGATTAAGCCAGAGTTGTTCAAAAATGGCATTCAAATCACAAATTCGCATCATTTTTGCCTTGCGGAGCTCGACTCGTGCCTGTTACTCAGCCAAACCTCTCTGCACCATAACCGGATCGACCCAGGTCTCTGAATCCCCCGACCTTCCGAACTGGGTAAAGTTCTTCGATACTAAAAGCTCTTCACATTCAGACTCTGAAGACGATGTCTTTGTTATTCCTCCATTGGCGCATTGGCTCGAAGACAACAGTAGAGTTGTCAAGCAGAAACTCCGCGAGACGAGCGATGACGAAGTGGACAAAGTAAGTATGATGCTTAAGAATCAACACCCATCACCGGAAAACGTTGCAGAAGCTTTGAAAGGAAAGACTTACAGGGTTTCGAACACTTTCGTTGCACAGCTACTGAAGAGATTTGGGAATGATTGGATCCCAGCTTATGGGATTTTCAAGTGGGCGAAAGACCAAACGCCTTATTGTCATTCACCCGAATCATATAACTCCATGGTTGATATCTTGGGGAGGGCTAAAAAGTTTAAACTGATGTGGGAGTTGGTGGATGAGATGAATCTTTTAACTGGGTATGTGAGTTTGGAGACGATGAGTAAGGTTATGAGGAGGCTTGCGAGGGCTGGTAGGTATCAGGAGGCAATTGAGGCATTCCGGAGGATAGAGAAATATGGAGTCAGTACAGACACAACAGCCATGAACGTGTTGATGGATGCATTAGTCAAGGCAGGCAGTGTTGAAGATGCACACAATGTGTTTGAAGAGTTGAAGGGTTCAATAGCTTTCAATTTGACCTCTTTCAATGTTCTAATACATGGGTACTGCAAAGCTAAGAAGCTAGATGAGGCATGGAAGATTATGGAGGAAGTTGAGAAAAATGGACTTGAACCTGATGTCATTTCCTACACTGCTTTCATCGAAGCTCATTGCCGAGACAAGGACTTCCGGAATGTGGATAAGATTCTGATGCAAATGGAACAAAAGGGCTGCAGGCCTAATGCAGTAACTTTCACCATTATAATGCATGCTCTAGGGAGGGCAAAACAGATAAATGAAGCTCTAAAAATATACGACAAGATGAAGAAAGAGGGTTGTGTGCCTGATAGTTCATTCTACAGCTCCCTGATATTCATTCTTGGTAAAGCTGGTAGGCTCACAGATGTTAATGAGATAGTAGAGGACATGACAAAGCAGGGGGTTAATCCAGATGTGTTGACATATAACACTATGATATCTTGTGCTTGTGCGAATTTGCAGGAAGAGACAGCTCTAAGATTGCTACGGAAAATGGGGGAGGTTTCGTGCAAGCCAGATCTCAAGACTTACCACCCTTTATTGAAGATCTTCTGTAAAAAGAAGAGAATGAAGGTGCTTAAGTTTTTGTTAGATCATATGTTCAAGAATGATGTAAGTATTGAAGCTGGGACTTACTCGATTTTGGTGCGTGGGATGTGCGAGAACGGGAAACTCCATCTTTCTTGTTCGTTCTTCGGGGAAATGGTGTCCAAGGGGATGGTTCCTAAAGACTCCACATTCAAGATGTTGAAGGAAGAACTTGAGAAGAAAAGTATGTTAGAAGAAATGAAAATCATTGAGAAGTTGATGTCGTATGCAACAAATCAAGATAGTTAAAGAATGATATTCATACTAGAGCAACCAGCTGTCTAAAGTTTGTGTTTATTCGAGCAATATCTTCAAAATAGGGGCTCTTACCTTGGAAAATCGTACAGTTGAGATGTTTTATCTATTTACAGTGTTTTTAGAGAAGGGACTAATGCATACAAGCGATGATTAACAATGACTTGCAAAAACACAAATTTAAATACAAACATATATACTCACCATTTATACTCGAATGGTGTAACAGGTTGAAATCAACATTATATAGACCATTTTAGGATATCATGAATATAATATACAATCATGTAGTATAAAAATGAATTCATAATTATACAAGATCGTTTATAACTTTAAAATGATCATCTCGCCAGTCACTATGAATGGGCGTGACAATCAATGTTCACGAACTGAAGATAATGAAATACTGTTAGGAAGGAGTATACAAAAATGTTCCTTTTTATTTATCTGCAATGGAGCTTAACTAATGGTAAAAAGTTTCCCTCATGTAACCAGATTTACCGGAAAGATTTATAGAGTAACTAAATAAGATAACCTATGTCTAATTGGAAGGGTCAAAATGTAGAAAGGAGCAGCCTTTTTGCTTGAAGAAGCTCTTTTCAATGTAAATACATTTAGTGGGATAAAGAAACCGTTCGAACTTCTCAGC 2560 40.12 MAFKSQIRIIFALRSSTRACYSAKPLCTITGSTQVSESPDLPNWVKFFDTKSSSHSDSEDDVFVIPPLAHWLEDNSRVVKQKLRETSDDEVDKVSMMLKNQHPSPENVAEALKGKTYRVSNTFVAQLLKRFGNDWIPAYGIFKWAKDQTPYCHSPESYNSMVDILGRAKKFKLMWELVDEMNLLTGYVSLETMSKVMRRLARAGRYQEAIEAFRRIEKYGVSTDTTAMNVLMDALVKAGSVEDAHNVFEELKGSIAFNLTSFNVLIHGYCKAKKLDEAWKIMEEVEKNGLEPDVISYTAFIEAHCRDKDFRNVDKILMQMEQKGCRPNAVTFTIIMHALGRAKQINEALKIYDKMKKEGCVPDSSFYSSLIFILGKAGRLTDVNEIVEDMTKQGVNPDVLTYNTMISCACANLQEETALRLLRKMGEVSCKPDLKTYHPLLKIFCKKKRMKVLKFLLDHMFKNDVSIEAGTYSILVRGMCENGKLHLSCSFFGEMVSKGMVPKDSTFKMLKEELEKKSMLEEMKIIEKLMSYATNQDS 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 14715097 14717656 + XM_039028020.1 Bhi01g00782 23555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00782 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Bhi01g00782 538 Gene3D Tetratricopeptide repeat domain 254 319 IPR011990 GO:0005515
Bhi01g00782 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Bhi01g00782 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Bhi01g00782 538 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 31 536 - -
Bhi01g00782 538 Pfam Pentacotripeptide-repeat region of PRORP 341 512 IPR033443 -
Bhi01g00782 538 Gene3D Tetratricopeptide repeat domain 90 253 IPR011990 GO:0005515
Bhi01g00782 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 254 IPR002885 -
Bhi01g00782 538 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 31 536 - -
Bhi01g00782 538 Pfam Pentatricopeptide repeat domain 280 340 IPR002885 -
Bhi01g00782 538 Gene3D Tetratricopeptide repeat domain 320 413 IPR011990 GO:0005515
Bhi01g00782 538 Gene3D Tetratricopeptide repeat domain 414 537 IPR011990 GO:0005515
Bhi01g00782 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Bhi01g00782 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 229 252 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 330 364 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 367 399 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 471 502 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 261 294 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 194 224 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 401 433 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 157 181 IPR002885 -
Bhi01g00782 538 TIGRFAM PPR: pentatricopeptide repeat domain 295 329 IPR002885 -
Bhi01g00782 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Bhi01g00782 538 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Bhi01g00782 538 Pfam PPR repeat 195 221 IPR002885 -
Bhi01g00782 538 Pfam PPR repeat 157 181 IPR002885 -
Bhi01g00782 538 Pfam PPR repeat 228 253 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00782 - - - csv:101223103 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00782 Bhi-Chr1:14715097 Bhi07g01872 Bhi-Chr7:50829982 9.66E-94 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014430 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00782 Bhi_Chr01 FPKM 17.335213 18.693342 48.393208 50.64098 46.234989 49.808254 48.267197 43.414822 46.228157 48.148106