Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00816 ACCGTTTCTCCCTTCTTTCAATTTGGCTGTTCGCAGTCTCACAGTTAGCGTAGTTGTTCGAAGTGGTCGCCTCCTCGAATCGCTCACCATTTGCTTCACTCTCAGCACTGATTAGCGGCGTCGATCAAGCATATGATATTCATGTAAATAGGTGGTTGGGAACGGTGGTTTTTCAAAGATTTAAAGTGGCTTCATGTTCTTGAGGAGAGGGTTTTCTTTTACTAGTCCTCAATTTGTTTTGAGGGCCTGCAGCTTTTGCTCAAAAGCATTGCCCAATGGAAGCCTTGGAAGCGAGAATGAAAGGGTAGCTCATTCAGATAGCATTGCAAATCGTTCATCCAGGCCTCAGGAATCTCCATTGTTCTCTGATGGTAAACCTCATTCAGTTGCTTATGATGTTGAACTTGTAGATGTTGATACTTGGGCAGTTTCATGTGGTTTAGCAAGAGCATGGGAAGGGAGAGAAGAGGGTTGGACGGGCTTTGAAAATAGATGCTTCTTAGAGGATGAGGCTCATGACCCAATTGATTATTGTGATTTAGATTTTGACAATATTGACAACATGAGAATACGTGGAAATCTCTTCTATAAACTTGATCGAGGATCCAAAGAATTTGAAGAATATAGCCTTGATTTTCATCGGAAGAAGAAGTCTATGAAGGAAAAGGAAGATATGCAAAAAAGCAAAAGTAAAATCAATGATAAGCTTGATAATCGTTTGGCAAATGGCCATGTAAAGCTTCCTGAACATGTGAAGAACAAATATGTAATAGTGGAAAGGGAGAGTGATGACGTTGAGAAGAAACTTAGGACACCCACGTTTAATCAACTTACTGGTCCTTACCATGAGCCATTTTGTCTTGATATATACATATCAAAGGCCTCAGTTCGAGCCTGTGTCATTCACCGAGTGACTAGTAAGGTTGTTGCTGTGGCACATTCAATTTCTACAGACATGAAATTTGACCTGACTTCAAGGAAGGATTCCTCTGCCTGTACTGCTGTGGGGGCTGTTTTGGCCCAGAGAGCATTGGCTGATGATATCCACAATCTGGTATACACTCCAAGAAAAGGTGAGAGGATAGAAGGGAAGCTTCAAATTGTGCTTCAGTCTGTCATTGATAATGGGATTAATGTTAAGGTAAAAATTAAGCAGCAAAAGAGACCCAGAAAGTGGGAAGTCCACCATTAGCATGGACGTATGAAGAACATGAGGCTGCACT 1223 41.54 MFLRRGFSFTSPQFVLRACSFCSKALPNGSLGSENERVAHSDSIANRSSRPQESPLFSDGKPHSVAYDVELVDVDTWAVSCGLARAWEGREEGWTGFENRCFLEDEAHDPIDYCDLDFDNIDNMRIRGNLFYKLDRGSKEFEEYSLDFHRKKKSMKEKEDMQKSKSKINDKLDNRLANGHVKLPEHVKNKYVIVERESDDVEKKLRTPTFNQLTGPYHEPFCLDIYISKASVRACVIHRVTSKVVAVAHSISTDMKFDLTSRKDSSACTAVGAVLAQRALADDIHNLVYTPRKGERIEGKLQIVLQSVIDNGINVKVKIKQQKRPRKWEVHH 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 15200230 15202654 - XM_039040645.1 Bhi01g00816 23589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00816 332 Gene3D - 196 314 - -
Bhi01g00816 332 CDD Ribosomal_L18_L5e 217 313 - -
Bhi01g00816 332 PANTHER EXPRESSED PROTEIN 40 326 - -
Bhi01g00816 332 SUPERFAMILY Translational machinery components 203 313 - -
Bhi01g00816 332 MobiDBLite consensus disorder prediction 30 59 - -
Bhi01g00816 332 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 223 314 IPR005484 GO:0003735|GO:0005840|GO:0006412
Bhi01g00816 332 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 40 326 IPR005484 GO:0003735|GO:0005840|GO:0006412
Bhi01g00816 332 MobiDBLite consensus disorder prediction 30 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00816 K02881 RP-L18, MRPL18, rplR; large subunit ribosomal protein L18 - csv:101213193 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00816 Bhi-Chr1:15200230 Bhi06g01723 Bhi-Chr6:48637493 2.16E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g503 . . . . . . . . . . Cma06g01412 . Car06g01218 . . . . Bhi01g00816 . . . Hepe05g1549 . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo06g01414 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003116 1 3 2 2 2 1 3 1 1 1 1 1 2 1 2 2 1 3 2 1 2 2 2 1 1 1 1 4 1 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00816 Bhi_Chr01 FPKM 2.583868 2.328275 0.0 0.0 1.659606 1.308194 1.555883 0.500784 0.0 0.258761