Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00873 CCAACAAATACCCTTTTAAACAGTACCCTTTTGTTTGGTTGTAGTAGGATCTTTGCTTCTCCTCCATTTTAACACAAGCCACAGGAGAATCTCTATCTATATCCTGCAACCTTCATCCCCACATTGTTCTTCCTCCATTTCCGGCGAAACCCAGTTCAGGGTTTGTTTTCCGGCCACTCTCCTGTTGTTCTTTTCATTAGGGGCAAATAATGGCTCAGATTTTAGCTCCATCCACTCAATGGCAACTGAGAACTAAACATACTTCAATGAGTTCTAACCCCATTACCTCTAAGATGTGGAGTTCCATACTTCTGAAGCAGAACAAGAAAGGAGCAGTAAAAAGCTCTGCAAAATTCAGAGTCTTGTCTGTCAAATCTGAAGGTGGCACTATCAACAGGATGGAAGATCTGCTAAATCTGGATGTCACACCGTATTCCGACAAGATTATTGCTGAATATATCTGGATTGGAGGATCTGGCATTGATTTGCGTAGTAAGTCAAGGACTATATCAAAGCCTGTTGAACATCCATCTGAGCTACCCAAGTGGAACTATGATGGATCTAGTACTGGGCAAGCACCTGGAGAAGACAGTGAAGTTATTCTATATCCTCAAGCAATTTTCAAGGATCCCTTCCGTGGTGGCAACAACATTTTGGTGATTTGTGATGCATACACACCAGCAGGCGTGCCCATCCCTACAAACAAACGACACAGAGCTGCCGAGATTTTCAGCAATAAGAAAGTTGTGGATGAAATTCCTTGGTATGGTATAGAGCAAGAGTACACCCTACTTCAGACAAATGTGAAGTGGCCTTTAGGTTGGCCAGTTGGAGCTTATCCAGGTCCTCAGGGCCCTTATTACTGTGGTGTTGGAGCTGATAAGTCGTTCGGTCGAGACATATCAGATGCCCACTACAAGGCTTGTTTATATGCTGGAATCAATATTAGTGGCACCAACGGAGAAGTTATGCCTGGCCAGTGGGAGTATCAAGTTGGTCCTAGTGTTGGGATCGAAGCTGGAGATCATATTTGGTGTTCTAGATACATTCTTGAGAGGATCACTGAGCAAGCTGGGGTAGTTCTCTCACTTGATCCAAAACCAATTGAGGGTGACTGGAATGGAGCTGGATGCCACACCAATTACAGTACAAAGAGCATGAGAGAGGAAGGAGGCTTTGAAGTTATAAAGAAGGCAATTCTGAATCTGTCTCTTCGCCATAAGGAGCATATCAGTGCTTATGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCACGAAACAGCAAGTATCAACACCTTTTCCTGGGGAGTGGCTAACCGTGGCTGTTCAATCCGTGTGGGACGTGACACCGAGAAGCAAGGCAAAGGTTATTTGGAAGACCGACGTCCTGCTTCAAACATGGACCCATATGTTGTGACCTCACTACTAGCAGAAACAACCATACTGTGGGAGCCAACACTTGAAGCCGAAGCACTGGCTGCTCAGAAACTGTCATTGAAGGTCTAAAGCCAATGAGTCATTTGGTTTTGAGGGCAAAGTTCTAAGTTGATTAGCATAATTTACCAAAACCTGGCAAAGAATTTCCCTCATTCTGTTAGATAATGCAGAGAAGACCTTTTGTAAATAAAGGTCTTGAAGTCTTCCAGTCAGCTTTTCAGAACAATCATACATCCAAAAAAATAATCTTTTGAAGCAACAAAAAAAACCTTCATCTGTGTACTTTGCAGATAGTGTTTGACTTGTTTCTGATTGAAATTTATGTGATGTCAGATGTTCATTTTATTTGAATGTTTATTCAATTGGATTCATACAGTGCCCCCTTCATCCAGTTACCATCTGGTTATGAATTTATGCATACATTTTTCTTCT 1871 42.49 MAQILAPSTQWQLRTKHTSMSSNPITSKMWSSILLKQNKKGAVKSSAKFRVLSVKSEGGTINRMEDLLNLDVTPYSDKIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGVPIPTNKRHRAAEIFSNKKVVDEIPWYGIEQEYTLLQTNVKWPLGWPVGAYPGPQGPYYCGVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKQGKGYLEDRRPASNMDPYVVTSLLAETTILWEPTLEAEALAAQKLSLKV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16478406 16483347 + XM_039049222.1 Bhi01g00873 23646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00873 432 Pfam Glutamine synthetase, catalytic domain 228 405 IPR008146 GO:0004356|GO:0006807
Bhi01g00873 432 Gene3D - 61 163 IPR036651 GO:0004356|GO:0006542|GO:0006807
Bhi01g00873 432 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 163 432 IPR008146 GO:0004356|GO:0006807
Bhi01g00873 432 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 297 313 IPR027303 -
Bhi01g00873 432 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 164 416 - -
Bhi01g00873 432 SUPERFAMILY Glutamine synthetase, N-terminal domain 77 162 IPR036651 GO:0004356|GO:0006542|GO:0006807
Bhi01g00873 432 SMART Gln_synt_C_2 163 411 IPR008146 GO:0004356|GO:0006807
Bhi01g00873 432 Pfam Glutamine synthetase, beta-Grasp domain 82 157 IPR008147 GO:0004356|GO:0006542|GO:0006807
Bhi01g00873 432 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 79 159 IPR008147 GO:0004356|GO:0006542|GO:0006807
Bhi01g00873 432 SUPERFAMILY Glutamine synthetase/guanido kinase 164 413 IPR014746 GO:0003824
Bhi01g00873 432 PANTHER GLUTAMINE SYNTHETASE 61 415 - -
Bhi01g00873 432 ProSitePatterns Glutamine synthetase signature 1. 115 132 IPR027302 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00873 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - csv:101212441 871.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00873 Bhi-Chr1:16478406 Bhi01g01941 Bhi-Chr1:43236177 0 dispersed
Bhi01g00872 Bhi-Chr1:16478405 Bhi01g00873 Bhi-Chr1:16478406 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00873 Bhi_Chr01 FPKM 58.049629 67.09243 29.191185 29.972813 39.138657 41.13612 40.742554 39.870071 41.062187 41.728386