Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00948 AGAGAGTAGAAAGCAGTGGTGAGGGAAGGCAAAAATTCGGCTTTCAGTACACACATTTCATTGCATATCACAATCCTCAAAACTCCATTCTTACCTTCTCCAATTTCCAAACCAACGCCGTCTTCTTCTTCTTCTTCTTCCATATCCCATTCCCTTTCCCGGAAGTTCTCTTCAATTTCCTCTCCAAGATTCCTCTCATTTCCCCCATCTTCTTCACAAATCCTCACTCTCTCTTCACTTTCCATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTCGTTCAGGATGGATCCACGCCCGAACTCGGCGACGCTTTGGCCCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTTTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTAGTGGCTTGCGCTGGAGTTTGCCGGAGTTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCGGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTGAACGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCACTGTGTAATGGATGCTATTCCTGCCTCTGCAATCGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCGAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAGTCGAATCACACGGACAATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTTGCTTCACCTGAAAATGGACTTGCCGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACGATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCCTGTGAATGAGACATCTCTACTGATCAGGATCATGTTAGTGCAGTCAGTGAGATTTTCTGTCTTACAACAAGAGCTATTGAGTGGACATGAATGGGTCTAGCAATTAATGGTGTCATGAGAGACCCTTGAATTGAATCGGAAAGAAGACGTGGGGGCTTAATTGGAAGCCAGGCTTTGAATTTCACAGCTCATATCTCCAATTTTTGGTAACTTTTTGTGTCTACAGTACACATTGAATATTTATTTTCTTTGATGTATATATTAACTCTTTTGTGAATGATCCGATGATGCACCAAGAGGCCCCATTCCTATATAATAATTTATATACTTTTAGGTGCTTGATTTATTATTTATTATTTTTTTATCTTTTATCTTTAA 1776 43.81 MSLKSIIQEMRSRSRRVVQDGSTPELGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 17406519 17410332 + XM_039028441.1 Bhi01g00948 23721
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00948 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Bhi01g00948 387 Pfam Tub family 96 382 IPR000007 -
Bhi01g00948 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Bhi01g00948 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Bhi01g00948 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Bhi01g00948 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Bhi01g00948 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Bhi01g00948 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Bhi01g00948 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Bhi01g00948 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Bhi01g00948 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Bhi01g00948 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Bhi01g00948 387 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515
Bhi01g00948 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Bhi01g00948 387 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 387 - -
Bhi01g00948 387 PANTHER TUBBY-RELATED 1 387 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bhi01g00948 Bhi12g01742 CCT
Bhi01g00948 Bhi12g01742 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00948 Bhi-Chr1:17406519 Bhi12g01742 Bhi-Chr12:56464738 0 dispersed
Bhi09g00548 Bhi-Chr9:11597798 Bhi01g00948 Bhi-Chr1:17406519 5.15E-15 dispersed
Bhi09g00549 Bhi-Chr9:11597798 Bhi01g00948 Bhi-Chr1:17406519 4.97E-14 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89 PF01167 Tub 1.40E-110 CL0395 Bhi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00948 K19600 - csv:101217713 778.859