Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bhi01g00948 | AGAGAGTAGAAAGCAGTGGTGAGGGAAGGCAAAAATTCGGCTTTCAGTACACACATTTCATTGCATATCACAATCCTCAAAACTCCATTCTTACCTTCTCCAATTTCCAAACCAACGCCGTCTTCTTCTTCTTCTTCTTCCATATCCCATTCCCTTTCCCGGAAGTTCTCTTCAATTTCCTCTCCAAGATTCCTCTCATTTCCCCCATCTTCTTCACAAATCCTCACTCTCTCTTCACTTTCCATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTCGTTCAGGATGGATCCACGCCCGAACTCGGCGACGCTTTGGCCCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTTTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTAGTGGCTTGCGCTGGAGTTTGCCGGAGTTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCGGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTGAACGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCACTGTGTAATGGATGCTATTCCTGCCTCTGCAATCGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCGAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAGTCGAATCACACGGACAATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTTGCTTCACCTGAAAATGGACTTGCCGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACGATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCCTGTGAATGAGACATCTCTACTGATCAGGATCATGTTAGTGCAGTCAGTGAGATTTTCTGTCTTACAACAAGAGCTATTGAGTGGACATGAATGGGTCTAGCAATTAATGGTGTCATGAGAGACCCTTGAATTGAATCGGAAAGAAGACGTGGGGGCTTAATTGGAAGCCAGGCTTTGAATTTCACAGCTCATATCTCCAATTTTTGGTAACTTTTTGTGTCTACAGTACACATTGAATATTTATTTTCTTTGATGTATATATTAACTCTTTTGTGAATGATCCGATGATGCACCAAGAGGCCCCATTCCTATATAATAATTTATATACTTTTAGGTGCTTGATTTATTATTTATTATTTTTTTATCTTTTATCTTTAA | 1776 | 43.81 | MSLKSIIQEMRSRSRRVVQDGSTPELGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17406519 | 17410332 | + | XM_039028441.1 | Bhi01g00948 | 23721 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bhi01g00948 | 387 | Pfam | F-box domain | 38 | 82 | IPR001810 | GO:0005515 | |
Bhi01g00948 | 387 | Pfam | Tub family | 96 | 382 | IPR000007 | - | |
Bhi01g00948 | 387 | ProSitePatterns | Tub family signature 1. | 317 | 330 | IPR018066 | - | |
Bhi01g00948 | 387 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Bhi01g00948 | 387 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Bhi01g00948 | 387 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Bhi01g00948 | 387 | PRINTS | Tubby superfamily signature | 299 | 316 | IPR000007 | - | |
Bhi01g00948 | 387 | PRINTS | Tubby superfamily signature | 317 | 333 | IPR000007 | - | |
Bhi01g00948 | 387 | PRINTS | Tubby superfamily signature | 344 | 363 | IPR000007 | - | |
Bhi01g00948 | 387 | PRINTS | Tubby superfamily signature | 365 | 387 | IPR000007 | - | |
Bhi01g00948 | 387 | ProSitePatterns | Tub family signature 2. | 372 | 387 | IPR018066 | - | |
Bhi01g00948 | 387 | Gene3D | Tubby Protein; Chain A | 92 | 387 | IPR025659 | - | |
Bhi01g00948 | 387 | SUPERFAMILY | F-box domain | 29 | 78 | IPR036047 | GO:0005515 | |
Bhi01g00948 | 387 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 387 | IPR025659 | - | |
Bhi01g00948 | 387 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 1 | 387 | - | - | |
Bhi01g00948 | 387 | PANTHER | TUBBY-RELATED | 1 | 387 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bhi01g00948 | Bhi12g01742 | CCT | |
Bhi01g00948 | Bhi12g01742 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bhi01g00948 | Bhi-Chr1:17406519 | Bhi12g01742 | Bhi-Chr12:56464738 | 0 | dispersed | |
Bhi09g00548 | Bhi-Chr9:11597798 | Bhi01g00948 | Bhi-Chr1:17406519 | 5.15E-15 | dispersed | |
Bhi09g00549 | Bhi-Chr9:11597798 | Bhi01g00948 | Bhi-Chr1:17406519 | 4.97E-14 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
89 | PF01167 | Tub | 1.40E-110 | CL0395 | Bhi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bhi01g00948 | K19600 | - | csv:101217713 | 778.859 |