Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bhi01g00948	AGAGAGTAGAAAGCAGTGGTGAGGGAAGGCAAAAATTCGGCTTTCAGTACACACATTTCATTGCATATCACAATCCTCAAAACTCCATTCTTACCTTCTCCAATTTCCAAACCAACGCCGTCTTCTTCTTCTTCTTCTTCCATATCCCATTCCCTTTCCCGGAAGTTCTCTTCAATTTCCTCTCCAAGATTCCTCTCATTTCCCCCATCTTCTTCACAAATCCTCACTCTCTCTTCACTTTCCATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTCGTTCAGGATGGATCCACGCCCGAACTCGGCGACGCTTTGGCCCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTTTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCCGCGGAAGACCGTAGTGGCTTGCGCTGGAGTTTGCCGGAGTTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCGGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTGAACGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCACTGTGTAATGGATGCTATTCCTGCCTCTGCAATCGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCGAGTCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAGTCGAATCACACGGACAATCAACCATCGGGATCTTCAACTAATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCGCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTGAAAAACTTTCAGTTAGTTGCTTCACCTGAAAATGGACTTGCCGGACCTGAACACGAGAAGATCATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACGATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCCTGTGAATGAGACATCTCTACTGATCAGGATCATGTTAGTGCAGTCAGTGAGATTTTCTGTCTTACAACAAGAGCTATTGAGTGGACATGAATGGGTCTAGCAATTAATGGTGTCATGAGAGACCCTTGAATTGAATCGGAAAGAAGACGTGGGGGCTTAATTGGAAGCCAGGCTTTGAATTTCACAGCTCATATCTCCAATTTTTGGTAACTTTTTGTGTCTACAGTACACATTGAATATTTATTTTCTTTGATGTATATATTAACTCTTTTGTGAATGATCCGATGATGCACCAAGAGGCCCCATTCCTATATAATAATTTATATACTTTTAGGTGCTTGATTTATTATTTATTATTTTTTTATCTTTTATCTTTAA	1776	43.81	MSLKSIIQEMRSRSRRVVQDGSTPELGDALAQSCWAYMPQELLREVLVRIESSENAWPPRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPSRIDFLPSLRFSWSKSNHTDNQPSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE	387

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
1	17406519	17410332	+	XM_039028441.1	Bhi01g00948	23721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bhi01g00948	387	Pfam	F-box domain	38	82	IPR001810	GO:0005515
	Bhi01g00948	387	Pfam	Tub family	96	382	IPR000007	-
	Bhi01g00948	387	ProSitePatterns	Tub family signature 1.	317	330	IPR018066	-
	Bhi01g00948	387	PRINTS	Tubby superfamily signature	150	166	IPR000007	-
	Bhi01g00948	387	PRINTS	Tubby superfamily signature	166	190	IPR000007	-
	Bhi01g00948	387	PRINTS	Tubby superfamily signature	215	242	IPR000007	-
	Bhi01g00948	387	PRINTS	Tubby superfamily signature	299	316	IPR000007	-
	Bhi01g00948	387	PRINTS	Tubby superfamily signature	317	333	IPR000007	-
	Bhi01g00948	387	PRINTS	Tubby superfamily signature	344	363	IPR000007	-
	Bhi01g00948	387	PRINTS	Tubby superfamily signature	365	387	IPR000007	-
	Bhi01g00948	387	ProSitePatterns	Tub family signature 2.	372	387	IPR018066	-
	Bhi01g00948	387	Gene3D	Tubby Protein; Chain A	92	387	IPR025659	-
	Bhi01g00948	387	SUPERFAMILY	F-box domain	29	78	IPR036047	GO:0005515
	Bhi01g00948	387	SUPERFAMILY	Tubby C-terminal domain-like	84	387	IPR025659	-
	Bhi01g00948	387	PANTHER	TUBBY-LIKE F-BOX PROTEIN 9	1	387	-	-
	Bhi01g00948	387	PANTHER	TUBBY-RELATED	1	387	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bhi01g00948	Bhi12g01742	CCT
	Bhi01g00948	Bhi12g01742	ECH

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bhi01g00948	Bhi-Chr1:17406519	Bhi12g01742	Bhi-Chr12:56464738	0	dispersed
	Bhi09g00548	Bhi-Chr9:11597798	Bhi01g00948	Bhi-Chr1:17406519	5.15E-15	dispersed
	Bhi09g00549	Bhi-Chr9:11597798	Bhi01g00948	Bhi-Chr1:17406519	4.97E-14	dispersed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	89	PF01167	Tub	1.40E-110	CL0395	Bhi	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bhi01g00948	K19600		-	csv:101217713	778.859