Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g00970 AGTTCGCACAGGAATTCTGCCGTTTTTTCATTCGGATTTGGAAAATGGCGGCCATTTCAATTTGCTTTGCTCCACAAGCTCTGGCGCGGCCCAGAGTTCGGAACCCTAGAAGCATACCGTCGGCCAAGAAGCTTCGTGGGAACAACAAGCCCAATCGCAATAGCGTCAAGATCAAAACCAATTCAAAGGAGTTATCTTCCATTGGCATTGAAGCCACCACTTACACTCGCCTCCCTCCCAGGGAAGACTTCACTCTTCTTAGCTTTGATTCTTCAACTCTTAATTCTGCTTCTTCATCGAAAGATTCGTCTGAGGTGAAGCTTTTGGATTCGGATGTTGCGATAATCGAGGAGGAAGATGATTCGGATTCTTTGAACTATGAAGAGCCGGAGGAAGAAGGGGGAGGAGGATTTGATGGTAATTTGGGGTTTGAGGATGGCTACGGGAAGTTTGAAGTGTTTGACGGGGAATATGATTCTGAATTGGAGGAGTACGGTGATAGTGATGTGGAAGAGGACGATGAAGAAGGAGAAAAGGTTTTAGCATTTAGGAAGGGGAAATTTGTTAATGCTGATGAAGCTTACGACGCTGGCGAAAAAGCAAGCTCTTTCATCGACGTTGAAGATGGGAAGGAGAAGGGGCTGCCAGCCGTAATGCGGTGCTTTGATCGAGCGAAAATCTATGTTAAAGCTGGAGATGGTGGCAATGGTGTTATGGCATTTCGGCGAGAGAAGTATGTGCCGATGGGTGGCCCATCAGGAGGAGACGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTTGACGAGTCGATGAATTCGCTATTGCCATTTCGAAATGGTATACATTTTCGTGCTGGAAGGGGTAGTCATGGGCAGGGGAGAATGCAGAATGGGGCAAAGGGTGAGGATGTAGTGGTGAAGGTGGCACCTGGAACAGTGATCAGAGATGCATTTAGCCAGGAGGTCCTTTTGGAATTATTGCATCCGGGGCAGCGTGCTCTGTTGCTGCGCGGTGGAAGGGGTGGAAGAGGCAATGCATCATTCAAGTCGGGGACAAATAAGGTTCCAAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGTTGGAGCTAAAGCTTGTTGCAGACGTTGGAATCGTGGGAGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCACAGCCAGCTATAGCAAATTATCCTTTTACCACTCTACTCCCTAACTTAGGTGTAGTTTCGTTTGATTATGATTCAACTATGGTGGTAGCAGATCTTCCAGGATTACTTGAAGGGGCACACGAGGGCTTTGGTTTAGGCCATGAATTTCTACGTCATACCGAAAGGTGTTCTGCGCTGGTGCATGTGGTTGATGGATCAGGACCACAACCAGAATATGAATTTGATGCTGTTCGTTTGGAGTTGGAGCTCTTTAGCCCTGAACTAGCTGAAAAGCCCTATCTTGTTGCATATAATAAAATGGATCTTCCTGAAGCGTATGAAAACTGGCCAGCATTCAAGGAAAAGCTACAAGCTCACGGGATTGAACCTTTTTGTATGAGTGCAGTAAAACGAGAGGGTACTTATGAAGTCATTAGTGCTGCATATCAGCTGCTAAGGGAGAATAAAGAAGACAAGGCATTTCAAGGTGGGAAAATACCACAGAATTTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTATGAAATTATTCATGATGGCGGTTCCAATATATGGCATGTAATAGGATCTGGTCTACAGCGTTTTGTTCAAATGACAAATTGGCGTTACATGGAGTCTGAAAGAAGGTTCCAACATGTCATGGAGGCTTGTGGTGTCAATAAGTCTCTCAGAAAACTTGGCGTCAAGGAGGGTGACACAGTATTTGTTGCAGAGATGGAGATGATCTGGCATGATTCACCAAATAGTTCTGGTCCATCTAATATGAAGAAAAGATCAGATTCTGTCAAATGGCCAGAGTGGAAGTAACTCATCATTGTTTGCTCACTGGTAACTTAATGCTGATAACAGCAGCAAGTTTATAGTGGTGCTGTCTGTATTTCTATGGTATATTGCAAACATCTTTAAAACGTGCAATAAGACGGATGAAAAGCTTTGACCTTCATTGCCATTGCTGAATGGTGGGAAGATGAATTTTCGTAATGGATCAGATGGACAGCCTTGCCATCCTGGAGATCCGAATGAAGAAGCAGTGTTTGTGAAGGTTTCTTTTGCACCCACCTCTCAAATGCTTAGATGAGAAGAAAGGAGTTCGAATTTTCCAAGAAAATTGCAATCAAGTCGACCACAGATCATAAATAGAAACACAATAGGCAGCATATAATTGATCTGCCATTAGAATGTTGTGTAATTTAGTGTTGTTCTGAAGAACAAAGCCGTTGCAGTTAAAAGGTTTTGGGCTGTTTGTTATAAAGTGGTGGTGAGATTATTTAAAGTGTAACTATCCTTATTCTGTGTAATCTATGTAGTAAGAAACAGTGACTAACAATTTTTCTCTTTTTACATTGTGCAAGGGTATATTGTATGGTCAAGTGGTTGTTCTGGATCTCGATAATTTTTTAGGGAGGGGGTGGACTCCAACATTATAAATGGAGCTCATGTTATTTGTTTTAAATCACTCTAATTAACATAGTATTTCAAGCTTA 2704 43.23 MAAISICFAPQALARPRVRNPRSIPSAKKLRGNNKPNRNSVKIKTNSKELSSIGIEATTYTRLPPREDFTLLSFDSSTLNSASSSKDSSEVKLLDSDVAIIEEEDDSDSLNYEEPEEEGGGGFDGNLGFEDGYGKFEVFDGEYDSELEEYGDSDVEEDDEEGEKVLAFRKGKFVNADEAYDAGEKASSFIDVEDGKEKGLPAVMRCFDRAKIYVKAGDGGNGVMAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNGIHFRAGRGSHGQGRMQNGAKGEDVVVKVAPGTVIRDAFSQEVLLELLHPGQRALLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQAHGIEPFCMSAVKREGTYEVISAAYQLLRENKEDKAFQGGKIPQNLDHVADRIHKQRSASIDDYEIIHDGGSNIWHVIGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGVKEGDTVFVAEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWK 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17763901 17770512 + XM_039038672.1 Bhi01g00970 23743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g00970 660 Gene3D - 362 541 IPR027417 -
Bhi01g00970 660 PRINTS GTP1/OBG GTP-binding protein family signature 365 385 IPR006073 GO:0005525
Bhi01g00970 660 PRINTS GTP1/OBG GTP-binding protein family signature 386 404 IPR006073 GO:0005525
Bhi01g00970 660 PRINTS GTP1/OBG GTP-binding protein family signature 414 429 IPR006073 GO:0005525
Bhi01g00970 660 PRINTS GTP1/OBG GTP-binding protein family signature 431 449 IPR006073 GO:0005525
Bhi01g00970 660 TIGRFAM Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 568 635 IPR015349 GO:0000166
Bhi01g00970 660 Gene3D GTP1/OBG domain 202 361 IPR036726 -
Bhi01g00970 660 Pfam 50S ribosome-binding GTPase 364 484 IPR006073 GO:0005525
Bhi01g00970 660 ProSiteProfiles Obg C-terminal (OCT) domain profile. 558 637 IPR015349 GO:0000166
Bhi01g00970 660 Hamap GTPase Obg [obg]. 205 531 IPR014100 GO:0000287|GO:0003924|GO:0005525
Bhi01g00970 660 SUPERFAMILY Obg GTP-binding protein N-terminal domain 207 361 IPR036726 -
Bhi01g00970 660 MobiDBLite consensus disorder prediction 103 127 - -
Bhi01g00970 660 CDD Obg 363 530 IPR031167 GO:0005525
Bhi01g00970 660 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 363 531 IPR031167 GO:0005525
Bhi01g00970 660 Gene3D - 568 638 IPR036346 -
Bhi01g00970 660 MobiDBLite consensus disorder prediction 17 41 - -
Bhi01g00970 660 Pfam GTP1/OBG 208 361 IPR006169 -
Bhi01g00970 660 SUPERFAMILY Obg GTP-binding protein C-terminal domain 565 637 IPR036346 -
Bhi01g00970 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 533 IPR027417 -
Bhi01g00970 660 ProSitePatterns GTP1/OBG family signature. 416 429 IPR006074 GO:0005525
Bhi01g00970 660 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 169 610 IPR045086 GO:0003924|GO:0005525
Bhi01g00970 660 Pfam Domain of unknown function (DUF1967) 567 635 IPR015349 GO:0000166
Bhi01g00970 660 MobiDBLite consensus disorder prediction 638 660 - -
Bhi01g00970 660 PANTHER MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 2 169 610 - -
Bhi01g00970 660 TIGRFAM Obg_CgtA: Obg family GTPase CgtA 207 530 IPR014100 GO:0000287|GO:0003924|GO:0005525
Bhi01g00970 660 ProSiteProfiles Obg domain profile. 204 362 IPR006169 -
Bhi01g00970 660 MobiDBLite consensus disorder prediction 103 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g00970 - - - csv:101207804 1160.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00970 Bhi-Chr1:17763901 Bhi09g02197 Bhi-Chr9:61700761 5.33E-57 dispersed
Bhi09g02191 Bhi-Chr9:61465971 Bhi01g00970 Bhi-Chr1:17763901 4.43E-07 dispersed
Bhi09g03708 Bhi-Chr9:92110145 Bhi01g00970 Bhi-Chr1:17763901 3.02E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g00970 Bhi_Chr01 FPKM 7.605442 8.864573 13.280429 13.284952 6.83846 7.591677 8.552708 41.515701 39.05962 36.956947