Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01018 AAAGGAAAAAAAAATGTTAAACGGTGCGTTTAGAGAGTGACCTGCTCTCCCTCTGCGCCTTCATTTGACATTTCTCTTCCATGGTTGAGCTTCTCGTATTTGGGCTGATTCGATCACTATAAATCCTCAAGGCTACACTCTCTTATACCGTTCGTTTGACTATTCAACTTGCGCGGTTCATCTGCCGCACTTGTTCATCGGATTGGAGTCAGCTGCCTGAAGAGGTTCTTCGTTGTTTTCATGAATTCAGCTTTTCTGTGTGAATAGCTGAGAGTTTGAGACATTGTCAACTATTGACATGCGTACATGAAGATGCTTCTAAGGAACATAGGTGCAGGACAAATCAATTGTCTTGATTTGAAGTACAGAAACCCTATTAAATTTTCTTTTAAATTTTTTTCCTCGTATGCTGGGGATTCTTCTCAAACAACAAATAGAAATGGGGCCCCTGTTTCTGGTGGGGGTGGTCTGGTGCCGGCAACAAAGTATGAGGACAAGAGACAAGTTTTAGATGGTGTGTGCCAAATTTTGGAGACTGGTCCTTGGGGATCTTTGGTTGAGAATAAGTTAGCGGAGCTTGACGCAAAACCAAATACAGAATTGGTAATTGGAGTCTTAAGGAGGCTGAAGGACGTAAACAATGCAGTAAATTACTTTCGATGGGCTGAGAGAGTAACAGACCTAGCACATTGCCCTGAAGCATACAATTCACTTCTCATGGTTATGGCTAGAACTAGAAAGTTTAATTGCTTGGAACAAATATTGGAAGAAATGAGTATTGCAGGTTTTGGCCCGTCAAATAACACATGTATTGAAATTGTACTAAGCCTTGTCAAATCTCGCAAGCTTAGAGAAGCTTTTACATTTATGCAAACTATGAGAAAGTTAAAATTCCGCCCAGCCTTTTCAGCATACACAACTTTGATTGGTGCACTATCTGCATCTCATGATTCTGATTGCATGCTCACCTTATTTCAGCAAATGCAGGAGCTTGGCTATGAAGTTAATGTTCATTTATTCACTACTCTCATTCGTGTATTTGCTAGAGAGGGTCGAGTTGATGCTGCACTCTCTCTTTTGGATGAGATGAAGAGCAATTCTTTAGAACCAGATGTTGTTCTTTATAATGTCTGTATAGATTGCTTTGGGAAGGCTGGGAAGGTGGATATGGCTTGGAAATTTTTTCATGAAATGAAAGCTAATGGTTTGGTTCTTGATGATGTAACTCATACTAGCATGATAGGAGTTCTCTGTAAAGCTGACAGGATGAATGAAGCAGTTGAGCTATTTGAACATATGGATCAAAACAAGCAAGTGCCTTGTGCATATGCATATAATACTATGATCATGGGTTATGGTATGGCTGGAAAGTTTGATGAGGCATACAGCTTACTTGAGAGACAGAGAAGAAAAGGATGCATTCCAAGTGTCGTCGCATATAATTGCATTCTTACTTGTCTTGGGAGGAAGGGGCGGGTAGACGAGGCATTAAAACTTTTTGAAGAGATGAAGAAAGATGCCATTCCCAATCTTTCAACATATAATATTATGATTGACATGCTTTGTAAGGCTGGACAACTCGAGACAGCGTTGGTTGTCCGGGATGCCATGAAAGATGCTGGGTTGTTTCCTAATGTTATTACAGTAAACATAATGGTTGACAGATTGTGTAAAGCCCAAAGACTTGATGATGCTTGTTCTATTTTCGAAGGGTTGGATCATAAAACTTGCACACCTGATACAGTAACATATTGTTCTCTTATAGAAGGATTGGGTAAGCATGGGAGAGTAGATGATGCCTACAAGCTATATGAACAGATGTTGGATTCTGACCAGATCCCAAATGCTGTTGTGTATACATCTCTCATAAGGAACTTTTTCAAGTGTGGAAGGAAGGAGGATGGCCACAAGATATATAACGAAATGATACGTCTAGGTTGTTCTCCTGACCTGCTGCTTCTTAATACCTACATGGATTGCGTTTTTAAAGCTGGAGAAATTGAGAAGGGCCGGGCCTTGTTTCAGGAGATTAAGGCCCTAGGATTTATTCCAGATGTGAGGAGTTATACAATCCTAATTCATGGCTTGGTGAAAGCAGGTTTTGCGCATGAATCTTATGAGTTGTTCTACACAATGAAGGAACAAGGTTGTGTTCTGGATACTCGTGCATATAACACCGTTATCAATGGATTCTGCAAGTCTGGCAAGGTAAATAAAGCTTATCAATTGCTAGAGGAGATGAAGACAAAGGGTCATGAACCCACTGTTGTTACTTATGGTTCTGTTATCGATGGGCTTGCAAAGATTGACCGGCTTGATGAGGCATATATGCTCTTTGAAGAAGCAAAGTCGAAAGGAGTAGAACTAAATGTTGTTATATATAGCAGTCTAATCGATGGATTTGGGAAAGTGGGTAGAATCGATGAAGCATACTTGATCATGGAAGAGTTGATGCAAAAAGGTTTGACACCTAGTGTATACACATGGAATTGCTTGCTTGATGCATTGGTGAAAGCAGAAGAAATTAGCGAAGCCCTTGTTTGCTTTCAGTCTATGAAAGACTTGAAATGTACTCCTAATTATATAACTTATAGCATTCTAATTCATGGTCTTTGTAAGATTAGAAAATTCAATAAGGCATTCGTGTTCTGGCAAGAGATGCAGAAGCAAGGCTTAAAGCCTAATGTATTCACCTACACCACCATGATCTCAGGACTCGCTAAGGCTGGAAACATTGCGGAGGCAAATGCTCTTTTCGAGAAGTTTAAGGAAAAGGGCGGTGTGCCTGATTCTGCTATTTACAATGCTATAATAGAAGGGTTAAGTAATGCAAACAGGGCATTGGATGCTTATAGAATTTTTGAGGAAACTCGATCGAAAGGTTGTAGTATTCACACGAAAACTTGTGTTGTTCTATTAGATTCACTGCATAAGGCTGAATGCATCGAGCAGGCTGCAATCGTGGGTGCTGTATTACGGGAAACTGCTAAGGCTCAGCATGCTGCAAGATCCTGGACATAACGTGGTATCTATGAGAGCAACTAGATGGAGCTGTTTTAATCAAAAGTAGTGATTGCCTTTGCAGGTAATAGGAAATACTTGAAGTATGAGTGAAAATAACCTCGAGGGCGATGAGTAATGTTGTTGAAGTCATACTAAGTGAAGTATGCAGATACAGGTAACATTACATAACCTTACTGGGTAGAATGAGAACGGCTAGACATGGAAGCTGAAGATCGTTAACAATTCAGTACTTACATTTTGCTGGTCGGTTTCAAGATTTTGTAGAATCTGTGAGTCTGTGACCTCTTCTTAGTGCATCTAAAGTGTCCAAAGCGAGGACAGTTTTCAATGCTGAACAACGATGGCACAGCAGGTCACTTTGGTTATGCTTGTTCTTATGCAATTCCCTTGGTAAGTCGAGAACAAAGAGCTTTTAGGTGCTCTGAAGTCCAGTTGCAAGTCTTCATTCATGGCTTTCATGGCTTTCCAGGATGCCATATCCCTCAGTCTCATTAGCGGTGGTTTCGTTCTGGACATCATGCTGACAATGGTAAACTATCTCCCGGCTCGTGATATTGATACGCAACTTAAAACTAACCTGTGCCAAAGCTACCATTTTCTTGATAAATTCATCCTTGATTTTTTCCCAGTTATATTTAAAGGTCATGTTAAAGTTACCATTTTGATTCTGTAGTTCCATGGACTTTTTTCCCCACATGTTAACATGTTATGCATTTAATTGCATACAGTGAGTTATTCAAGTTTTGCAGTTTTTTATTTGGTTGAGAAAAATGGGTACAAATTTTGGTGTTAAGTAAAACAATACACAGGTCAATTTCAAGCTATGGTT 3853 39.87 MKMLLRNIGAGQINCLDLKYRNPIKFSFKFFSSYAGDSSQTTNRNGAPVSGGGGLVPATKYEDKRQVLDGVCQILETGPWGSLVENKLAELDAKPNTELVIGVLRRLKDVNNAVNYFRWAERVTDLAHCPEAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSLVKSRKLREAFTFMQTMRKLKFRPAFSAYTTLIGALSASHDSDCMLTLFQQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTHTSMIGVLCKADRMNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFDEAYSLLERQRRKGCIPSVVAYNCILTCLGRKGRVDEALKLFEEMKKDAIPNLSTYNIMIDMLCKAGQLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCTPDTVTYCSLIEGLGKHGRVDDAYKLYEQMLDSDQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMIRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKALGFIPDVRSYTILIHGLVKAGFAHESYELFYTMKEQGCVLDTRAYNTVINGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGVELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPSVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGLKPNVFTYTTMISGLAKAGNIAEANALFEKFKEKGGVPDSAIYNAIIEGLSNANRALDAYRIFEETRSKGCSIHTKTCVVLLDSLHKAECIEQAAIVGAVLRETAKAQHAARSWT 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18534706 18540141 - XM_039040937.1 Bhi01g01018 23791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Bhi01g01018 904 Gene3D Tetratricopeptide repeat domain 509 577 IPR011990 GO:0005515
Bhi01g01018 904 Gene3D Tetratricopeptide repeat domain 647 712 IPR011990 GO:0005515
Bhi01g01018 904 Gene3D Tetratricopeptide repeat domain 578 646 IPR011990 GO:0005515
Bhi01g01018 904 Gene3D Tetratricopeptide repeat domain 435 508 IPR011990 GO:0005515
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 688 722 IPR002885 -
Bhi01g01018 904 Gene3D Tetratricopeptide repeat domain 713 904 IPR011990 GO:0005515
Bhi01g01018 904 Gene3D Tetratricopeptide repeat domain 319 434 IPR011990 GO:0005515
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 404 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 758 792 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 237 270 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 760 794 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 306 337 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 795 828 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 621 654 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 831 861 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 515 548 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 553 584 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 725 758 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 445 479 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 480 513 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 376 403 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 586 619 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 690 723 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 411 444 IPR002885 -
Bhi01g01018 904 TIGRFAM PPR: pentatricopeptide repeat domain 655 689 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Bhi01g01018 904 SUPERFAMILY TPR-like 365 769 IPR011990 GO:0005515
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 723 757 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat 515 545 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat 342 371 IPR002885 -
Bhi01g01018 904 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 72 894 - -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bhi01g01018 904 Gene3D Tetratricopeptide repeat domain 213 318 IPR011990 GO:0005515
Bhi01g01018 904 Gene3D Tetratricopeptide repeat domain 80 212 IPR011990 GO:0005515
Bhi01g01018 904 PANTHER OS07G0249100 PROTEIN 72 894 - -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 618 652 IPR002885 -
Bhi01g01018 904 Pfam Pentatricopeptide repeat domain 783 837 IPR002885 -
Bhi01g01018 904 Pfam Pentatricopeptide repeat domain 152 210 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat 439 468 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat 683 714 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat 230 262 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat 474 505 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 793 827 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat family 373 421 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat family 722 771 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat family 268 317 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat family 553 596 IPR002885 -
Bhi01g01018 904 Pfam PPR repeat family 618 666 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 828 862 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 617 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 653 687 IPR002885 -
Bhi01g01018 904 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01018 - - - csv:101204426 1694.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01016 Bhi-Chr1:18534706 Bhi01g01018 Bhi-Chr1:18534706 0 dispersed
Bhi01g01018 Bhi-Chr1:18534706 Bhi09g03018 Bhi-Chr9:78205070 2.09E-22 dispersed
Bhi01g01017 Bhi-Chr1:18534706 Bhi01g01018 Bhi-Chr1:18534706 0 tandem
Bhi01g01018 Bhi-Chr1:18534706 Bhi01g01019 Bhi-Chr1:18534706 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g302 . . . . . . . . . . . . . . . . . Bhi01g01018 Tan10g1011 . . Hepe05g1445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008580 1 4 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01018 Bhi_Chr01 FPKM 4.867066 6.31904 3.540856 5.333951 7.666797 4.99613 7.241567 7.396601 7.333603 9.201896