Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01191 TGGGTAAAATTTAGCGACTCAGTTGGGTTCGAATCATTTTATGGAAGATGTCGAACAAATTTGTCTTTCGAAGGAAAAAAGAACAAAGCAAAATGGCTTCAAGACAGTAGCCAGAGCTAAGGGAGACGACGCTCGGATTCTTCATCTACTCCCAGAAGAAGAGGCGCCGCTTAACTCAGTCATCGGAAATAGCAATGGAATTGGAGGGTGTGGATGATCTTGCCCTTCACCTGATTTTTGCGAAATTAAGCCCTAAAGATTCTGCCGTAGCTGCTTGTGTTAGCCGCCAATTCAGGTCTTCAGCGTCCGAAGATTCTCTATGGGAGAAATTCTGCAACCAGGACCTCAACCTCACCGACCCAATTGATCATTTGGGAAACCTAATTCCTTCATTCAAGGAAACGTATAAAGTATGGCGCAGAGCTTTTGGGATGTATCCTTGGCCTCTGGTCAAGCGAGTTAAGGGATGTTGGGATAGACTCAAAAATTGGTTGAGTACTAATTTTCCTGAGGCTCTGGTGACACTTCGGGATGGTGCATCAGAAGCTGACATTCAAGAATTGGAAAATACTTTGAAAGTGAAGCTACCTCTTCCAACGAGGATCCTTTATCGTTTTCACAATGGTCAAGAATTAAAAGGCGGATATGTTGATAGTATTCGAGGCTTTCCGTTGGGTTTAATAGGGGGATACACTTTCTATGGACAGACAGTAAATGTTTATTTGTTGCCTCTAAAACAGGTGGTCTCTGAAACAAAATCAATCATTCGAGATCTTGGTTTCTCAAGGAGATCCAAATTTATTGTTGTAGCTTCCTCTTCTACACTCACTGAGAAGGTTTTCTTCCTTAATTGTGCTTCTGGTCAACTCTTTGTGGGTACTGCAAATCTTCGTGAAGATGGAGAAATGATCCCCTGTGTACCTGGCGCATTGATAAACTCAGTCCATGAGTGTAATGCAGAACAGCAACAAGATGCTATGTTATTATGGCTAGAAGAGCATGTTCGGCGCTTAGAAAATGGTATTATCAAGCTTCGTGAAACTAAGAACATTAGAAGCATCTCTCTTTTTCCTGAAGAATCTCCCTTATGCTCTGCTGCAATAACAAATGGTGTCCGTGTTCGTGCTTCTGCTGTCTTTATCCCGGAGTTAACGGATCTTCTCGATAGTGGTGGAAACTATCAATTTGCATATTCAATCCGCATGTCATTACAGGATGAAGGTTGCATCATAAATGGGATAACATTCAACTCATGCCAATTGCATCTTAGACACTGGATAGTTCTAGCTAATGATTATCTGGTTTCAAGAGTTGATGGAGAGGCCGTTATTGGAGAGTATCCCCTTTTGCATCCGGGTGAAGAATTTGTCTACGAAAGTTGCTCATCTCTTTATTCCTCCATGGGCTCACTTGAAGGGTCTTTTACATTTGTCCCTGGAAGCTTGACATATCCAAAAGGCAGCCCCTTTGAAGTTCAAGTGGCAAGGTTTCCTCTCCAGGTTCCAACCTACATCTTCTGATCTGATTACTAAATTCTAATGTACAAAGAGCTGAGTTTTGTATACATCACACCCCTCACCTCACTCATATTTCCTCTGTATGTGAGATTGGATTGTATGAGTGGTTTTTATATAATTTACATTTTGCCTGTTCAAGATCCTCTA 1664 41.71 MELEGVDDLALHLIFAKLSPKDSAVAACVSRQFRSSASEDSLWEKFCNQDLNLTDPIDHLGNLIPSFKETYKVWRRAFGMYPWPLVKRVKGCWDRLKNWLSTNFPEALVTLRDGASEADIQELENTLKVKLPLPTRILYRFHNGQELKGGYVDSIRGFPLGLIGGYTFYGQTVNVYLLPLKQVVSETKSIIRDLGFSRRSKFIVVASSSTLTEKVFFLNCASGQLFVGTANLREDGEMIPCVPGALINSVHECNAEQQQDAMLLWLEEHVRRLENGIIKLRETKNIRSISLFPEESPLCSAAITNGVRVRASAVFIPELTDLLDSGGNYQFAYSIRMSLQDEGCIINGITFNSCQLHLRHWIVLANDYLVSRVDGEAVIGEYPLLHPGEEFVYESCSSLYSSMGSLEGSFTFVPGSLTYPKGSPFEVQVARFPLQVPTYIF 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23454434 23459911 - XM_039042652.1 Bhi01g01191 23964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01191 441 ProSiteProfiles ApaG domain profile. 301 441 IPR007474 -
Bhi01g01191 441 Pfam SMI1 / KNR4 family (SUKH-1) 114 170 IPR018958 -
Bhi01g01191 441 Gene3D - 96 227 IPR037883 -
Bhi01g01191 441 Gene3D - 6 95 - -
Bhi01g01191 441 PANTHER F-BOX PROTEIN SKIP16 1 441 - -
Bhi01g01191 441 Gene3D ApaG domain 299 440 IPR036767 -
Bhi01g01191 441 SUPERFAMILY SMI1/KNR4-like 93 159 IPR037883 -
Bhi01g01191 441 SUPERFAMILY F-box domain 11 75 IPR036047 GO:0005515
Bhi01g01191 441 SMART fbox_2 6 46 IPR001810 GO:0005515
Bhi01g01191 441 SUPERFAMILY ApaG-like 303 441 IPR036767 -
Bhi01g01191 441 Pfam ApaG domain 327 413 IPR007474 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01191 K10290 FBXO3; F-box protein 3 - csv:101212250 809.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01191 Bhi-Chr1:23454434 Bhi08g01618 Bhi-Chr8:46224752 4.40E-08 dispersed
Bhi01g01191 Bhi-Chr1:23454434 Bhi01g01192 Bhi-Chr1:23457213 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1271 Blo01g00192 . . Bda08g00159 . . . . . . . . . . . . . Bhi01g01191 . . . Hepe05g1298 . Lcy11g1257 . . . . . . . . . . . . . . . . . . . Bpe05g00973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011929 1 2 1 1 1 0 1 0 0 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 2 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01191 Bhi_Chr01 FPKM 3.758594 4.785168 1.93976 2.177836 2.248698 2.333858 3.080341 4.791252 7.270992 5.520988