Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01192 TTTTGGGTAAAATTTAGCGACTCAGTTGGGTTCGAATCATTTTATGGAAGATGTCGAACAAATTTGTCTTTCGAAGGAAAAAAGAACAAAGCAAAATGGCTTCAAGACAGTAGCCAGAGCTAAGGGAGACGACGCTCGGATTCTTCATCTACTCCCAGAAGAAGAGGCGCCGCTTAACTCAGTCATCGGAAATAGCAATGGAATTGGAGGGTGTGGATGATCTTGCCCTTCACCTGATTTTTGCGAAATTAAGCCCTAAAGATTCTGCCGTAGCTGCTTGTGTTAGCCGCCAATTCAGGTCTTCAGCGTCCGAAGATTCTCTATGGGAGAAATTCTGCAACCAGGACCTCAACCTCACCGACCCAATTGATCATTTGGGAAACCTAATTCCTTCATTCAAGGAAACGTATAAAGTATGGCGCAGAGCTTTTGGGATGTATCCTTGGCCTCTGGTCAAGCGAGTTAAGGGATGTTGGGATAGACTCAAAAATTGGTTGAGTACTAATTTTCCTGAGGCTCTGGTGACACTTCGGGATGGTGCATCAGAAGCTGACATTCAAGAATTGGAAAATACTTTGAAAGTGAAGCTACCTCTTCCAACGAGGATCCTTTATCGTTTTCACAATGGTCAAGAATTAAAAGGCGGATATGTTGATAGTATTCGAGGCTTTCCGTTGGGTTTAATAGGGGGATACACTTTCTATGGACAGACAGTAAATGTTTATTTGTTGCCTCTAAAACAGGTGGTCTCTGAAACAAAATCAATCATTCGAGATCTTGGTTTCTCAAGGAGATCCAAATTTATTGTTGTAGCTTCCTCTTCTACACTCACTGAGAAGGTTTTCTTCCTTAATTGTGCTTCTGGTCAACTCTTTGTGGGTACTGCAAATCTTCGTGAAGATGGAGAAATGATCCCCTGTGTACCTGGCGCATTGATAAACTCAGTCCATGAGTGTAATGCAGAACAGCAACAAGATGCTATGTTATTATGGCTAGAAGAGCATGTTCGGCGCTTAGAAAATGGTATTATCAAGCTTCGTGAAACTAAGAACATTAGAAGCATCTCTCTTTTTCCTGAAGAATCTCCCTTATGCTCTGCTGCAATAACAAATGGTGTCCGTGTTCGTGCTTCTGCTGTCTTTATCCCGGAGTTAACGGATCTTCTCGATAGTGGTGGAAACTATCAATTTGCATATTCAATCCGCATGTCATTACAGGATGAAGGTTGCATCATAAATGGGATAACATTCAACTCATGCCAATTGCATCTTAGACACTGGATAGTTCTAGCTAATGATTATCTGGTTTCAAGAGTTGATGGAGAGGCCGTTATTGGAGAGCATTTGGAATGGCCTTATAACGGAAGAGCAATGCAAGTGATTGAAAGAAAAGAACCACACAACCCACCTAGCTCAAAATGGAATTTGAGCATTTGTCCTTCCTTTTCCACTAATATGAAATGATTGACACTGTGGAACTTATTTATCTTTTTGTTTATGAAATTTGTATTAATTACTTAATCTGATGACTAGGTATTTATAAGTTCTATGGTTTCAGGACATGGTATGTAATTGCCTAGGTAGAATAAGATTTCCTAGGTTAGAAAATGATCACCTGAGGTTGGCTGGGTTTGGACATGTGATTTAGAAAATGAAAAGAGAAAAACCTTGATGTTTGGTGGGAGCTCTATATCACCAGACACCGTAAGAAAGGAGAATAGTTATTTGGTGCTTTGGAGTGTCCACCCTGCATCAACTTTCTGCATTCTTTATTTTGTTTTCTCCTCTTTTGAATTGTATGTATTATGAGAGATGTTAAGAAGATGGCATTAACGAACATTTGAAGACCCATTAATGATCAACCTCTGGCGCTGGGATTATAAATTTCAAATTTGATA 1897 39.96 MELEGVDDLALHLIFAKLSPKDSAVAACVSRQFRSSASEDSLWEKFCNQDLNLTDPIDHLGNLIPSFKETYKVWRRAFGMYPWPLVKRVKGCWDRLKNWLSTNFPEALVTLRDGASEADIQELENTLKVKLPLPTRILYRFHNGQELKGGYVDSIRGFPLGLIGGYTFYGQTVNVYLLPLKQVVSETKSIIRDLGFSRRSKFIVVASSSTLTEKVFFLNCASGQLFVGTANLREDGEMIPCVPGALINSVHECNAEQQQDAMLLWLEEHVRRLENGIIKLRETKNIRSISLFPEESPLCSAAITNGVRVRASAVFIPELTDLLDSGGNYQFAYSIRMSLQDEGCIINGITFNSCQLHLRHWIVLANDYLVSRVDGEAVIGEHLEWPYNGRAMQVIERKEPHNPPSSKWNLSICPSFSTNMK 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23457213 23459914 - XM_039042663.1 Bhi01g01192 23965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01192 421 Gene3D ApaG domain 299 385 IPR036767 -
Bhi01g01192 421 ProSiteProfiles ApaG domain profile. 301 421 IPR007474 -
Bhi01g01192 421 SUPERFAMILY ApaG-like 303 382 IPR036767 -
Bhi01g01192 421 Pfam SMI1 / KNR4 family (SUKH-1) 114 170 IPR018958 -
Bhi01g01192 421 PANTHER F-BOX PROTEIN SKIP16 1 382 - -
Bhi01g01192 421 SUPERFAMILY F-box domain 11 75 IPR036047 GO:0005515
Bhi01g01192 421 Gene3D - 96 227 IPR037883 -
Bhi01g01192 421 SUPERFAMILY SMI1/KNR4-like 93 159 IPR037883 -
Bhi01g01192 421 SMART fbox_2 6 46 IPR001810 GO:0005515
Bhi01g01192 421 Pfam ApaG domain 327 382 IPR007474 -
Bhi01g01192 421 Gene3D - 6 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01192 K10290 FBXO3; F-box protein 3 - csv:101212250 704.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01191 Bhi-Chr1:23454434 Bhi01g01192 Bhi-Chr1:23457213 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1272 . . . . . . . . . . . . . . Sed02g1061 . . Bhi01g01192 Tan10g1203 Cmetu06g2378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011929 1 2 1 1 1 0 1 0 0 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 2 1 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01192 Bhi_Chr01 FPKM 13.211773 13.621711 21.020933 19.782206 15.35189 14.43951 15.987913 13.256247 11.698721 14.014932