Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01220 ATTTCTAAAAAATTAAGACCTTGACATTTTTGTCGACCTTGAATAAGATTAATATTAAACATTAGAAATAAAATCACTACCTTCAAAGTCAAGTGCATATATACAACTGTATGCATGAAGTTCAATACAATATGAAGCTTAATTGTAATTCAACTCTCTCATCTTCTAGGTAGGGAGGGAGGGAGAAGGCCTGTGAAGTGAATAGATGATTGGCACATGGATGTAAGTTTTGGAGTTTGATTATTCAAACTGTAGTTTATTTTCACATAGCCAACCTGTCTCCATGTCATCCCAATTTCCTCATCCTCTTCTTCCCTATATAACCAAACCAGAGAGAGCTAGCTAAGCTTCATCAAAGCAACAATGGAGAGGAGTCTTGGAGTGTTCTTTTTTCTTCACTTCTTTCTTCTATCTTCTGCAGCCTTTTCCAAGCATGCCTCTAATGGCATTGATTGGTGGTGTAGAAAAACCACTTACCCTGAAACCTGCAAGTACTTTTTCAACCAAGGCAGCAAAGCTGCTCCCAAAGATATGACTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAAGAGCTCTGGGTGCTGAGAGCCACACTAAGGGTGTCGGTTCCAAGTGTCGAAATGGGAAGGAAAAGGCCGCTTGGGCTGATTGCTTGAAGCTTTACCAAAACACCATCTTTCAGCTCAACCAAACTCTTGATTCCGCTACTAAATGTACTGAGTTTGATATCCAAACCTGGCTTAGTACTGCCCTAACCAACCTCGAAACGTGCCGCACCGGGTTTGCTGAGCTTAATGTTTCGGACTATATATTGCAGCTGATCATGTCAAACAATGTCACAAAGCTGATAAGCAACAGTTTGGCTATTAACAATGCTTCAGCTGGGTTGGGGAAGGAAACATATAAAAAGGGATTCCCAAGTTGGCTTTCAGGTGGTGACAGGAGGTTACTGCAGTCATCTTCAACAAAGGTGGACCTTGTGGTGGCTCAGGACGGATCCGGTAACCATACAACGGTAGGAGCCGCTCTAGAGGAGGCTGCAAAAAGGAAGACAAATGGGAGATTTGTTATACAAGTAAAGAGAGGGGTTTACCAAGAAAACCTGGAGATAGGAAGTAAGATGAAGAATATAATGCTCATAGGAGATGGAATGAGATTTACCTTCATTACTGGTAATCGAAGTGTAGGAGGAGGCTCCACTACTTTCAATTCTGCTACTGTTGCGGTGACTGGTGAAGGATTTATAGCTCGGGGCATCACATTCCGGAACACTGCAGGTCCTGAAAACCATCAAGCAGTTGCTCTCCGATCTGGCGCAGATCTTTCTGTTTTCTACCGTTGTGCCTTTGAAGGGTATCAAGACACCCTTTATGTCCATTCACAAAGACAATTCTATAAGGAGTGTTATATTTACGGCACTGTAGATTTTATATTTGGCAATGCTGCAGTTGTTCTTCAGAACTGCATGATTTACGCAAGGAGGCCAATGAATGGTCAGAAGAATGCAGTTACCGCTCAAGGACGGACCGATCCAAATCAAAATACTGGCATTTCAATCCACAATTCACGGGTCATGGCCACAGATGACCTAAAACCAGTGGAGAGCACAGTGAAAACCTACTTAGGAAGGCCTTGGAAGGAGTACTCTCGAACAGTTTTCATGAAAACTTACCTCGATAGTTTGGTTGATCCAACAGGTTGGTTGGAGTGGGATGGTGACTTTGCACTCGATACTTTATATTATGGAGAGTATAACAACATCGGTCCTCGTTCACCAACCAGCCAGCGAGTGAACTGGAAAGGTTACCGTGTTATAAGAAATTCAACAGAGGCATCAGAGTTCACCGTCCAAAATTTCATTGCAGGGCAGTCGTGGTTGCCAGACACAGAGGTCCCATTCACTCCTGGACTCTAGAAGAAAAAGTTTTCTTCATTCTTCCT 1946 42.75 MERSLGVFFFLHFFLLSSAAFSKHASNGIDWWCRKTTYPETCKYFFNQGSKAAPKDMTEFKKMVIQFAMERALGAESHTKGVGSKCRNGKEKAAWADCLKLYQNTIFQLNQTLDSATKCTEFDIQTWLSTALTNLETCRTGFAELNVSDYILQLIMSNNVTKLISNSLAINNASAGLGKETYKKGFPSWLSGGDRRLLQSSSTKVDLVVAQDGSGNHTTVGAALEEAAKRKTNGRFVIQVKRGVYQENLEIGSKMKNIMLIGDGMRFTFITGNRSVGGGSTTFNSATVAVTGEGFIARGITFRNTAGPENHQAVALRSGADLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARRPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDDLKPVESTVKTYLGRPWKEYSRTVFMKTYLDSLVDPTGWLEWDGDFALDTLYYGEYNNIGPRSPTSQRVNWKGYRVIRNSTEASEFTVQNFIAGQSWLPDTEVPFTPGL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24957552 24959937 - XM_039026486.1 Bhi01g01220 23993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01220 518 PANTHER PECTINESTERASE 7 517 - -
Bhi01g01220 518 SUPERFAMILY Pectin lyase-like 203 517 IPR011050 -
Bhi01g01220 518 PANTHER PECTINESTERASE 7 517 - -
Bhi01g01220 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 172 IPR035513 -
Bhi01g01220 518 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 172 IPR006501 GO:0004857
Bhi01g01220 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 173 IPR035513 -
Bhi01g01220 518 SMART PMEI_2 24 170 IPR006501 GO:0004857
Bhi01g01220 518 CDD PMEI-like_3 31 173 - -
Bhi01g01220 518 Pfam Pectinesterase 206 503 IPR000070 GO:0030599|GO:0042545
Bhi01g01220 518 Pfam Plant invertase/pectin methylesterase inhibitor 29 170 IPR006501 GO:0004857
Bhi01g01220 518 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Bhi01g01220 518 Gene3D - 200 518 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01220 Bhi-Chr1:24957552 Bhi12g00014 Bhi-Chr12:343394 0 dispersed
Bhi10g01663 Bhi-Chr10:42096434 Bhi01g01220 Bhi-Chr1:24957552 2.48E-108 dispersed
Bhi10g01664 Bhi-Chr10:42126902 Bhi01g01220 Bhi-Chr1:24957552 1.46E-103 dispersed
Bhi10g02285 Bhi-Chr10:58657033 Bhi01g01220 Bhi-Chr1:24957552 1.62E-124 dispersed
Bhi01g01220 Bhi-Chr1:24957552 Bhi01g02828 Bhi-Chr1:70160086 1.54E-149 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01220 K01051 - csv:101211449 965.296