Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01293 CAATTGGTTGAATATGTGCGACCTTGGAATCCGTCAAGACGAGAGTCGTCTGTGGCTAATTCCGTCACCGTCTCGTCGAACACCAAACAAATCTCAATCACACAGTGATCTCTTGAGAGAGAGATGTTGGAATTCCATTGCTGTTATCCTAATTGGTAGCTTCCGCAAATGGGCAGTGCCGACGTGATTGGACAACTGCTCCAATTCGATGTTGAAGACACTATATTTGTTGCGGTGGGCACCGATGTCGACGACGCTGAAGCTACTCTTATTTGGGCTGTCCAAAACTTCACCGGCAAGAGTTTCTGTCTGCTTCATGTTCATCACCTTGCTCCCAAAAATGAAGAGCCATCTTCCTATACACTAAAAGAACATATAGACAAGGCATTCGAGGAACCCGAAAGGCAAAAGCCTTTTGAACTTCTTAATCAATATGTTCTCATTCTTGCCAAACTGGGGGTACAAGCCCAAAAAGTATGGATTGAGACGAACAACGTTGAGAGAGGGATTGTTGAAATTATTGCTCAGTACGGTATTAAATGGCTAGTCATGGGCTTAGACACAGAAAGATACAATATGAACTCAACAACAAATGGTGGTGGGAGATTCAAACATCCAACCTTTTGGTGTCTAGACCAGAGGTCCATAGGATTGAAGTCCAAGAAAGCTTTCTATGTATCCCAGCAAGCACCAATATGTTGCGATATATGGTTTGTCTGCAGAGGACGCCTTATATACTCGAGGCAGGGCAGAATGGGAAGATTCAATCCATTGCCGCTGGAAAATTTGGAAATAGGAATCAACCATACCAACCGTCTGAGACCAGAATCTGTGACTTATGCTCAAGAAAAGGAGAATGCGTGTGATAGGATAAGCAGGTTTAGATATCAAGATTTGGTGGATAAAAATTGTTCCAATAATGGAGACCTGGGTACTTCAAGGACAACGCTATTGTTAAAGAATGAGGGAGTAAAAGGTGGACATCCAGTTAGCCAGAGTGGTTTGCAAGAAGAAGGCTTGATGAATGTTAAGTCCATACAAGACTTTGAGGAAGTGAAGGCTTGGGTAGAGGAAGATGTTGTGGGTGCTGAACTCAAGGCTAAATCATCAGAAAGCTCGTGTATGGAGGAGGTGAAGAAAAGAAGAGAGATGGAAGAACTTTTAGAGAGAGAGAAAAAGGAAGTAGAACGAATGAACAAAGAGCATGATGAGCTTTTGAAAGAACTACAACATGTCCAAGAGCAGAAATCATTACTTGAGAGAAAAGCTTCGGAGTACCAGTGTGAGGTGGAGGAGTTGGAGAAGAAGATGTTTGCAGCTATTGACCTCTTAGTAAGTTTTAAGGAAAAACGAGATAAGTTGCAGATAGAGCATGAAGGTGCAGTGGACAAGCTTCGCAAGCTGAAGAATATTGTTAAAAAGGAACCTTCACGCTATCGCAGTGCAGAAATGCCTACATTCTCCTTTATGGAAATAATTGAAGCAACGAGAAACTTTGACCCTTCCTGGAAGATTGGTGAGGGAAGACATGGTAATGTTTATAAAGGCCTCCTCCGTCACATGGATGTTGCTCTAAAAATGTTTCCTTCGTATGGTTCTCATTCCCAATCAACGTTCCAATACGAGGTTGAGGTCTTGAGTAGGGTCAGGCATCCCAACCTGGTTTCGATTATTGGAGCATGTCCAGAATCTAGGTTAATAGTGTATGAGAATTTGAAAAATGGAAGCTTGGAAGACCACCTTTCCTACAAAAATCACAATCGCCCACTTTCATGGCAGATACGGATTCGCATTGCTGCTGATATCTGCTCAGCCCTTATATTTCTACATTACAGCAACCCTTGCATTGTCCATGGAGATATAAAACCAAGCAAAATCCTACTTGATGCCAATTTTATTGCCAAACTAGGTGGCCTGGGCATCTCTCGTTTGATCCCCCAAGAAGAGAAGGTGGCATCAGTATGTAATATGTCGAAAGAAGATAATCCATATATAGATCCCGAGTATCTTGAGACTGGAAGGTTCGCTCCAGAATCAGACGTCTACTCTCTTGGTGTTATTTTGCTGCGAATTTTAACTGCCAGAGCACCTCCGGGAATTGTAAAAGATGTAAAATGTGCCCTAGAAAATGACGAGATTGGTGCCATTCTGGACTCATCAGCTGGAGACTGGCCACATGATCTAGCAGAGCAATTAGCTCTTGTGGCATTGAGGTGCTGTGAGAAGGAAAAGTTGGATCGGCCTGACCTTGTCTCAGAATTATGGAGTGTTTTGGAGCCAATGAGATCCATTGCCTCAGCATCATGTTCAAGTTTGAAAAAACACGCTCGAGTGCCTGCCCATTTTACGTGTCCCATTTTTCAGGAAATTATGAAAGATCCACTCATTGCTGCAGATGGATTCACATACGAAGCTGACGCAATAAGAGGATGGTTCAAAAGTGGCCACAACACTTCTCCGATGACAAATCTTAAACTTGAGCACTGTAATCTTGTGCCAAATTATGCTCTTTTGAATGCAATTCAAGAGTGGCAGCATCAGCTATGACAACTTTGGTTTGGCTTCCTTTGCACCTTCACCTTCCAGAAAAGAATACAAACTGGTAAGGCTTGGTACAAAAGCTGTCCCATAATAACAGTTCATACATGTTATTTACATATGCCTATATATTTCCTTCGATGTACAGAACATTATTATAGACCTAAATAAATCATAGTCATACTGCTGATTTAAAGTCTAATGTTAATAGAATCAAAACCATGCTGGTCAAAACGCTTTTATCTTA 2785 41.97 MGSADVIGQLLQFDVEDTIFVAVGTDVDDAEATLIWAVQNFTGKSFCLLHVHHLAPKNEEPSSYTLKEHIDKAFEEPERQKPFELLNQYVLILAKLGVQAQKVWIETNNVERGIVEIIAQYGIKWLVMGLDTERYNMNSTTNGGGRFKHPTFWCLDQRSIGLKSKKAFYVSQQAPICCDIWFVCRGRLIYSRQGRMGRFNPLPLENLEIGINHTNRLRPESVTYAQEKENACDRISRFRYQDLVDKNCSNNGDLGTSRTTLLLKNEGVKGGHPVSQSGLQEEGLMNVKSIQDFEEVKAWVEEDVVGAELKAKSSESSCMEEVKKRREMEELLEREKKEVERMNKEHDELLKELQHVQEQKSLLERKASEYQCEVEELEKKMFAAIDLLVSFKEKRDKLQIEHEGAVDKLRKLKNIVKKEPSRYRSAEMPTFSFMEIIEATRNFDPSWKIGEGRHGNVYKGLLRHMDVALKMFPSYGSHSQSTFQYEVEVLSRVRHPNLVSIIGACPESRLIVYENLKNGSLEDHLSYKNHNRPLSWQIRIRIAADICSALIFLHYSNPCIVHGDIKPSKILLDANFIAKLGGLGISRLIPQEEKVASVCNMSKEDNPYIDPEYLETGRFAPESDVYSLGVILLRILTARAPPGIVKDVKCALENDEIGAILDSSAGDWPHDLAEQLALVALRCCEKEKLDRPDLVSELWSVLEPMRSIASASCSSLKKHARVPAHFTCPIFQEIMKDPLIAADGFTYEADAIRGWFKSGHNTSPMTNLKLEHCNLVPNYALLNAIQEWQHQL 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26171890 26186348 - XM_039036864.1 Bhi01g01293 24066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01293 792 ProSiteProfiles Protein kinase domain profile. 443 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi01g01293 792 CDD RING-Ubox_WDSUB1_like 726 767 - -
Bhi01g01293 792 SMART Ubox_2 725 788 IPR003613 GO:0004842|GO:0016567
Bhi01g01293 792 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 13 790 - -
Bhi01g01293 792 SUPERFAMILY RING/U-box 720 791 - -
Bhi01g01293 792 PANTHER OS02G0152300 PROTEIN 13 790 - -
Bhi01g01293 792 Gene3D Transferase(Phosphotransferase) domain 1 516 721 - -
Bhi01g01293 792 Gene3D Phosphorylase Kinase; domain 1 422 515 - -
Bhi01g01293 792 ProSiteProfiles U-box domain profile. 721 792 IPR003613 GO:0004842|GO:0016567
Bhi01g01293 792 Pfam Protein tyrosine and serine/threonine kinase 448 694 IPR001245 GO:0004672|GO:0006468
Bhi01g01293 792 Coils Coil 318 380 - -
Bhi01g01293 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 722 792 IPR013083 -
Bhi01g01293 792 Gene3D HUPs 11 131 IPR014729 -
Bhi01g01293 792 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 130 - -
Bhi01g01293 792 Coils Coil 395 415 - -
Bhi01g01293 792 SUPERFAMILY Protein kinase-like (PK-like) 423 695 IPR011009 -
Bhi01g01293 792 ProSitePatterns Protein kinases ATP-binding region signature. 449 470 IPR017441 GO:0005524
Bhi01g01293 792 Pfam U-box domain 722 790 IPR003613 GO:0004842|GO:0016567
Bhi01g01293 792 CDD STK_N 18 186 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01293 - - - bhj:120081741 1565.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01293 Bhi-Chr1:26171890 Bhi01g01298 Bhi-Chr1:26171890 0 dispersed
Bhi01g01292 Bhi-Chr1:26171890 Bhi01g01293 Bhi-Chr1:26171890 0 tandem
Bhi01g01293 Bhi-Chr1:26171890 Bhi01g01294 Bhi-Chr1:26171890 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g716 . . . . . . . . . Cmo18g01279 . . . . . . Cpe14g00102 Bhi01g01293 . . . . . . Cla01g00450 . . . . . . . . . . Lsi05g01216 . Chy09g01031 Cme06g01014 . . . . . . . . . . . . Cma18g01253 Car16g00105 Car18g01163 Cpe09g00082 Cpe13g00095 . . . . . . . . . . . . . . . Csa03g01725 . Cme09g01573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87318 PF07714 PK_Tyr_Ser-Thr 7.50E-35 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01293 Bhi_Chr01 FPKM 7.762349 8.092423 7.397301 7.517314 3.869523 3.246658 3.964386 8.555948 7.314344 7.80591