Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01319 TGAGAAGAAACCGACATGTAGTTTTTAGTTTATACCCATTCGCATAAACCTCGCCGTCTATCCGTTTGTTGAGAAACCTTCGTCGGGATTTCGCCGGAGCCGTCACCTTCCGATCCTGAAGATGGTAAGCCAAAGGCAAAGACTTGCTCGGAAAAAGTACAGAGAAGAACACCCAGAACTGTTCCCGAAAGCAGAGCCAACGCCACCAAAAGACCCTGACAAGAAGAAGAAGAAGAGTAAATTCAAGCGCAAAAAGGAAGAATCGATTTCAAACAGAGACGCAAATAAACCCTACAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTGCCTGGGATGAAGCCTGGAGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATTGCTAAGCTTTGCCCTGAAAAGGCTCAATGGGAGAAGAACAAGATATGCTTGCTTTGCCGAAGACGAGGGCACAGCCTAAAAAATTGCCCGGACAAAAATGAAGGGACTCTGGATAAGAAGTTATGCTATAATTGTGGTGAAACAGGACATTCATTGGCTAATTGTCCACAACCCATTCAAGATGGGGGAACTAAATTCGCCAGTTGTTTTATTTGTAATGAAAGTGGACACTTGAGCAAGAACTGTCCAAAGAATACTCATGGTATCTACCCTAAGGGTGGTGGTTGTAAAACTTGTGGGGAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGGCACCCAAGTGATTGATAGGGTTGGTGAATCTGGTTACAGATCATCTGGATATGTGGAAATGCCGAGACGACCAGAGACGAAGCGCATCAGTGGTGATGATCTCGAGGATGACTTCATGAGTGATGAAGATCGTTTGCAGATCAAAGATGCAAAAATGGGAAAGAAAAAGGGTCCTAAAGTTGTGAGGTTCGAAGGAATGAAAAATACAAATGGATCTCTTCATCTCTCACATTTCTCCTCTTCTCTTTTCTTCCATTATTCTTCCCCTCCATTTTTCCCTACACCCATCTCTCTCCCCTTTCTTTCACATTCTTCATACACAAAAATGGCGAACTCTGCATCTGGAATGGCTGTGAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAACGAAGAGGAACTATCGATTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAGAAACTTGGAAGCCCTGAAGAGACTTATGAGGATTTCACTGCTGCTATTCCTGCTAATGAGTGTCGCTATGCTGTCTTTGATTTTGATTTCACTACTGATGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGTCACCTGACACATCCAAAGTGAGAAATAAAATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTACAAGCCACGGATCCTAGCGAAATGAGCTTCGACATAATCAAAGCTCGAGCTTTTTAAGCTCGATTTTCCTCCCTCTCTCTCTTTTTCTCCATCTTCATTTTTGAGACTAAGCATAACTAATGTTGTGACATTACTCTTTCACTTTCTTTGCCCCCTTTTTTCTTCTTTTTTTACTTTTTCATCTTTTTCACAGCTTTGTTTATTTTTGCT 1612 41.5 MVSQRQRLARKKYREEHPELFPKAEPTPPKDPDKKKKKSKFKRKKEESISNRDANKPYKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKICLLCRRRGHSLKNCPDKNEGTLDKKLCYNCGETGHSLANCPQPIQDGGTKFASCFICNESGHLSKNCPKNTHGIYPKGGGCKTCGEVTHLAKDCPNKGTQVIDRVGESGYRSSGYVEMPRRPETKRISGDDLEDDFMSDEDRLQIKDAKMGKKKGPKVVRFEGMKNTNGSLHLSHFSSSLFFHYSSPPFFPTPISLPFLSHSSYTKMANSASGMAVRDECKLKFLELKTKRNYRFIIFKIENQEVVVEKLGSPEETYEDFTAAIPANECRYAVFDFDFTTDENCQKSKIFFIAWSPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26503837 26510935 + XM_039030384.1 Bhi01g01319 24092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01319 445 SUPERFAMILY Actin depolymerizing proteins 307 443 - -
Bhi01g01319 445 MobiDBLite consensus disorder prediction 8 34 - -
Bhi01g01319 445 ProSiteProfiles Zinc finger CCHC-type profile. 183 198 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 SUPERFAMILY Retrovirus zinc finger-like domains 122 172 IPR036875 GO:0003676|GO:0008270
Bhi01g01319 445 Pfam Zinc knuckle 128 144 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 Pfam Zinc knuckle 182 198 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 Pfam Zinc knuckle 156 171 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 PANTHER COFILIN-RELATED 125 173 IPR017904 GO:0015629|GO:0030042
Bhi01g01319 445 PANTHER COFILIN-RELATED 304 445 IPR017904 GO:0015629|GO:0030042
Bhi01g01319 445 Pfam Zinc knuckle 101 117 IPR025836 -
Bhi01g01319 445 SMART adf_2 320 445 IPR002108 GO:0003779
Bhi01g01319 445 Gene3D - 150 201 - -
Bhi01g01319 445 Gene3D - 71 123 - -
Bhi01g01319 445 ProSiteProfiles ADF-H domain profile. 313 445 IPR002108 GO:0003779
Bhi01g01319 445 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 CDD ADF_cofilin_like 314 444 IPR017904 GO:0015629|GO:0030042
Bhi01g01319 445 ProSiteProfiles Zinc finger CCHC-type profile. 156 171 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 SUPERFAMILY Retrovirus zinc finger-like domains 71 120 IPR036875 GO:0003676|GO:0008270
Bhi01g01319 445 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 304 445 - -
Bhi01g01319 445 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 125 173 - -
Bhi01g01319 445 SMART c2hcfinal6 102 118 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 SMART c2hcfinal6 155 171 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 SMART c2hcfinal6 77 93 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 SMART c2hcfinal6 182 198 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Bhi01g01319 445 Pfam Cofilin/tropomyosin-type actin-binding protein 322 442 IPR002108 GO:0003779
Bhi01g01319 445 Gene3D - 124 149 - -
Bhi01g01319 445 MobiDBLite consensus disorder prediction 1 66 - -
Bhi01g01319 445 Gene3D Severin 305 444 IPR029006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01319 - - - cpep:111810346 689.108
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01319 Bhi-Chr1:26503837 Bhi12g00511 Bhi-Chr12:16322227 2.70E-81 dispersed
Bhi02g00177 Bhi-Chr2:3065711 Bhi01g01319 Bhi-Chr1:26503837 5.62E-11 dispersed
Bhi02g00178 Bhi-Chr2:3065713 Bhi01g01319 Bhi-Chr1:26503837 5.41E-10 dispersed
Bhi05g01260 Bhi-Chr5:45532239 Bhi01g01319 Bhi-Chr1:26503837 4.39E-06 dispersed
Bhi05g01261 Bhi-Chr5:45532239 Bhi01g01319 Bhi-Chr1:26503837 4.39E-06 dispersed
Bhi12g00512 Bhi-Chr12:16322227 Bhi01g01319 Bhi-Chr1:26503837 1.86E-65 dispersed
Bhi01g01319 Bhi-Chr1:26503837 Bhi03g01595 Bhi-Chr3:33823616 5.83E-74 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31