Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01322 CAACTCCTTACATTTCCCTTCTTATTCTTCCAACTATAATATCTCAACCACCACTCTCTTTCTCTCTCTACTTTCCATTTTTCCCTTTCATTTTCTCTCTCTTAACTCAAAAATGGCCGCCGATGAGCCCAACAAAGTAGAGTCTCAATCTCCATCAGAGCGCCCTCCACTGCCTGCGGCGGACTCGATGGAGGAGCGAACCAAAGACGTGGCGGAGGAGAAATCAATTATCCCATTAACCCCACCGGAGGTGAAGCCGGCCGATGACTCCAAAGCTCTGGCAACCATTGAAAGTTTTGGAATGATAGAGACTCATGAAAAAGCAGAGGAGAAAGAGAAAGACAGTGAAGGCTCAATTAATAGAGATGCTGTACTTGCAAGAGTTGCAACAGAGAAGAGATTGTCACTCATCAAAGCTTGGGAAGAGAGTGAAAAATCTAAGGCAGAGAATAGAGCCCACAAAAAGCTATCAGCAATTGGATCATGGGAGAACAGCAATAAAGCAGCTGTGGAGGCTGAACTGAAACAGATTGAGGAAAAATTGGAGAAGAAGAAAGCAGAGTATATAGAGAAAATGAAGAACAAAATAGCTTTGATTCACAAATCAGCAGAAGAAAAGAAGGCTGATATTGAAGCCAAGCGTGGAGAAGAAAAGATTAAGGCAGAGGAAATTGCAGCCAAATACAGATCCACTGGAACTGCTCCCAAGAAGATCCTTGGTTGTTTCTAATTTAAACAATTATATGCGAATTTCCTTCATTTATTTCTTCATTCTGATGGGAGTTTCTTTGTATTATTGTTTCTTTTATATATTCTTTATTTATAATTAATATATTATATAAATTGATAATTGAACTTCTTTCTTAA 867 39.22 MAADEPNKVESQSPSERPPLPAADSMEERTKDVAEEKSIIPLTPPEVKPADDSKALATIESFGMIETHEKAEEKEKDSEGSINRDAVLARVATEKRLSLIKAWEESEKSKAENRAHKKLSAIGSWENSNKAAVEAELKQIEEKLEKKKAEYIEKMKNKIALIHKSAEEKKADIEAKRGEEKIKAEEIAAKYRSTGTAPKKILGCF 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26621454 26624295 + XM_039019948.1 Bhi01g01322 24095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01322 205 PANTHER REMORIN 1.4 1 205 - -
Bhi01g01322 205 MobiDBLite consensus disorder prediction 1 52 - -
Bhi01g01322 205 Coils Coil 130 161 - -
Bhi01g01322 205 Pfam Remorin, C-terminal region 95 200 IPR005516 -
Bhi01g01322 205 MobiDBLite consensus disorder prediction 22 36 - -
Bhi01g01322 205 PANTHER OS02G0117200 PROTEIN 1 205 - -
Bhi01g01322 205 Pfam Remorin, N-terminal region 30 91 IPR005518 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01322 - - - bhj:120068231 353.984
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi01g01322 Bhi12g00225 CCT
Bhi01g01322 Bhi12g00225 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01322 Bhi-Chr1:26621454 Bhi12g00226 Bhi-Chr12:7277180 4.66E-41 dispersed
Bhi01g01322 Bhi-Chr1:26621454 Bhi01g01323 Bhi-Chr1:26621464 2.99E-135 tandem
Bhi01g00371 Bhi-Chr1:6476983 Bhi01g01322 Bhi-Chr1:26621454 1.07E-51 transposed
Bhi05g00614 Bhi-Chr5:16689114 Bhi01g01322 Bhi-Chr1:26621454 4.17E-77 transposed
Bhi11g02747 Bhi-Chr11:73803197 Bhi01g01322 Bhi-Chr1:26621454 1.51E-09 transposed
Bhi01g01322 Bhi-Chr1:26621454 Bhi12g00223 Bhi-Chr12:7277180 1.44E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g661 Blo06g01117 . Bda05g00072 . Bpe03g00289 . . Bma14g02086 . Cmo18g01268 Cma02g01062 . Car02g00805 . . Cpe05g00657 . Bhi01g01322 . . . . . . Cla01g00283 Cam01g0293 Cec01g0286 Cco01g0299 Clacu01g0292 Cmu01g0278 Cre09g2229 Cone1ag1155 Cone5ag0865 Cone14ag0091 Cone15ag0097 Lsi05g01228 Csa05g00303 Chy09g01204 Cme06g00994 Blo07g00413 Blo09g00109 . . . Bpe12g00425 Bma08g00336 . . Cmo02g01079 . . Cma18g01245 . Car18g01151 Cpe09g00093 . Bhi12g00225 . . Lac11g2116 Hepe06g1565 . Lcy12g1673 Cla05g00878 Cam05g0966 Cec05g0970 Cco05g0970 Clacu05g0954 Cmu05g0910 Cre05g0994 . . Chy06g00944 Cme09g01741
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000535 3 7 5 4 4 3 4 3 2 3 3 3 4 3 3 4 3 7 3 3 2 3 3 3 3 3 3 6 4 3 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01322 Bhi_Chr01 FPKM 12.228965 11.984493 9.513244 11.211885 4.289958 3.831688 3.817501 13.576762 14.722 18.171618