Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01324 TTAAACCCAATTGGAACAACTTGATGTGCAAGTTTGCTTAGTTTTGTCTTCTGTCCCTTACACTATAAAATGGTAAACTTGACAAACCCTATTTTTCCATATCCCATAAAGAAGAAGTGAATCAGAGGTTTTACAATATGGTGAAGCTGACAATGGTTGGAAGGGTTAGAGATGGATTGCCAATTGCACAAGGTATTAGGTATATTAATGAAGAGAATGATGATGTTTTGGGGTACAAAAAGCAAGCTGAATTCATACTCAAAGAGATCTCTAGAGGGACTTTATCATCTTCAAAAATGGCCATTCTAATGCATCATCACTGTTTCATTTACTTGGTGGAGAATGGTGTGTGCTATATGACATTGTGCGATTCTTCATACCCAAGAAAGCTGGCTCTCCATTACTTGCAAGATTTACAAAAAGAAGTTGGCGAGTTTGAGTATGCCCTAATAAATAAGCTTATCAAACCCTATAGTTTAACCCAATTTGATGGTATTATTAGCAATATTAGGAAACAATACATTGATACAAGAACACAGGCCAATCTATGCAAGCTCAATGCAAATCGTCGTCAAGCTGATCCAGACATGCTCACTTGTTCGCTTTCTGAGATTTTAGAGAGAAGGAGAAAATTGGATATGGTGGAAAGATCAATGTGTAATAATACGAATTCTCAAGGTGCGTCCTCCTCCATTTGGGGGTCTCCCTGTCTCCAGGAAATTGGCCTCAAATGGACGCCAATGGTTGTAACTTTTGGCGTAGTGCTTATCATTCTATGGGCTTCCTTTCTTCTTTTCGACATCTCATTATCTCAACATAATGAATTTGTAATTCTATATAACAATAGAAAATTGTTTCACTAATTTTAATATTCATTTCTCCCGATCATTTTTTTGTTCTTCAAATTTAAATTTAAAGTAAAATCTTTCATTTTTTTTTAGGTGTACGTGTTAGAGATT 959 35.56 MVKLTMVGRVRDGLPIAQGIRYINEENDDVLGYKKQAEFILKEISRGTLSSSKMAILMHHHCFIYLVENGVCYMTLCDSSYPRKLALHYLQDLQKEVGEFEYALINKLIKPYSLTQFDGIISNIRKQYIDTRTQANLCKLNANRRQADPDMLTCSLSEILERRRKLDMVERSMCNNTNSQGASSSIWGSPCLQEIGLKWTPMVVTFGVVLIILWASFLLFDISLSQHNEFVILYNNRKLFH 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26625480 26628664 + XM_039019964.1 Bhi01g01324 24097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01324 241 CDD Longin 5 128 IPR010908 -
Bhi01g01324 241 PANTHER SNARE-LIKE SUPERFAMILY PROTEIN 1 221 - -
Bhi01g01324 241 Pfam Regulated-SNARE-like domain 37 118 IPR010908 -
Bhi01g01324 241 Gene3D Longin domain 1 129 - -
Bhi01g01324 241 PANTHER VESICLE-TRAFFICKING PROTEIN SEC22B 1 221 IPR044565 GO:0005484|GO:0006888|GO:0006890
Bhi01g01324 241 SUPERFAMILY SNARE-like 1 128 IPR011012 -
Bhi01g01324 241 SMART Longin_2 40 120 IPR010908 -
Bhi01g01324 241 ProSiteProfiles Longin domain profile. 6 96 IPR010908 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01324 K08517 SEC22; vesicle transport protein SEC22 - csv:101213515 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01324 Bhi-Chr1:26625480 Bhi01g02846 Bhi-Chr1:70912526 2.33E-44 dispersed
Bhi01g01324 Bhi-Chr1:26625480 Bhi09g00291 Bhi-Chr9:6249177 2.71E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g659 . . . . . . . . . Cmo18g01267 . . . . Sed13g0120 . . Bhi01g01324 Tan01g0257 Cmetu06g1462 . Hepe07g0162 Mch10g0159 . . . . . . . . . . . . . . . Cme06g00993 . . . . . . . . . . . . Cma18g01244 . Car18g01150 . . . . . . . . . Cla05g00877 Cam05g0965 . Cco05g0969 Clacu05g0953 Cmu05g0909 Cre05g0993 . Csa03g01707 Chy06g00943 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013964 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 0 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01324 Bhi_Chr01 FPKM 20.312891 21.506601 18.136034 17.639589 19.380169 19.588745 20.803848 12.018455 12.584041 12.143591