Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01330 GCTAGTTTCTGCTTTCATCCAGTTGGGGAAGGATTTGAATATAAATGAAGAAGACGTAGAGTTTACGATGTAAGTACTTATTCCCAAAACCAAAACTCTTCCATTCCAGTCTGTAGAGAGCGAAAAAGCGCGCCAAAGCTATGGCCACTATGTTTGTATACATGCCAATGCGATCGCGTGTATGAGAAGAAGCAACAACTGATTTTGTTCTGCAAATTTCATGGGGAAACAGAAGCAACAAGTGATTTCTCGATTCTTTGCTCCAAAACCCAAGTCCCCATCTCTTTCTTCTTCTTCCTCCTCCTCCGCCGCCGCCTTAACTCAGCCGACCCAACCGTTATCACCTCCTAAGATATCAGCCACAGTCACTTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCACTTGCTTCTCAGTTAACACCACCCAAATCCTCTAAACGCCCCAAACTCTCTCCTCATACCCACAACCTGCTGCCTTCCGTCCCCAATCCCTCACTTCACAGAAGGTTCCTCGACAAGTTCCTTGAACCCACCGATGACTCTTTCGAACCTTCTAATCAAAACCCCAGAACCTCGAATGACGTTGATCCCAAATACACCCCTTTGGAGCTACAGGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTACAGGTACAGATTTTTTGGCCAAGATGCTGAAATAGCGGCTCGTGTTTTGGGTATTTATGCTCATTTAGATCGTAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCATGTGAGGAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTATCAAACAAACCGAAACCGCTGCGATTAAGGCTCATGGGTCGAATAAGTTAGGCCCCTTTTGTAGGGGATTATCAGCTTTGTATACTAAAGCAACATTGGAGGCAGCCCAGAATTTAGGGGGAGCTGAAGAAGGATGTGGTGGAGAGAGTAATTACTTGTTCTGTGTGGTTGAAAATAGTATGTTGGTGGGTAATTTGGAATGTAGAATCGAAAATGGGGTTGATGTGAAAATTGGGACGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATAGGGAATATGATGATAACTTTATGAGAAGTGGGCTTGAGGCAATGCTCTTGAGCTTGTCTCCTGCCGAGTTACTTCTTGGGGATCCCATATCAAAGCCAACAGAGAAGTTATTACTAGGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCATGTTTCACGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGGTGTCTTTATATGAAAACATTGACCAAGATAACTTAGCTGAACATCACAACCCTGATTCAGTGTTGGTTGGACAAAAAAGTGATCGCACAGCAATTAAGGAAATAGTAAACATGCCAAATTTAGCTCTTCAAGCCTTGGCCTTAACCATTCGTCACTTAAAGAAATTTGGTTTAGAAAGGATTGTGTCTTTGGGATCTTCTTTTAGGCCATTCTCATGCAAAATGGAGATGACCCTTTCAGGCAATACACTTACACAGCTCGAGGTTTTGAAGAATAATGATGACGGTTCTCAAACTGGATCTTTATTACAGTGCATGAATCATACCCTTACAATATTTGGTTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAGACATGATAATCGCTCGTCAAGAGGCTGTGTCCGAGATTGCTGCATCTATGGTATCTTCTAAAGTAACTCAAAATAACAGAGTGTTGGATGAAGAAGATTCTGATGTAATGGTCATTGAACCTGAATTGAATTATTTACTTTCATTGGTGTTGACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACCAGAATCTTTCACCGAACAGCAGCCCCATCAGAGTTCATTGCAGTTATTCAAGCTATTTTATTTGCGGGAAAACAGCTTCAGCAGTTTCACATCGATGAAGGGGATGACAATTATTCCAGTGAAAGTATGATTGACTCCAAGCTCCTAAGAAAGATGATTTTATCCGCTTCTTCCTCTGGTTTAATAAATATTGCTGCAAAGCTTTTGTCAATGATCAGCAAAGAAGCTGCAGATCAAGGAGACTTTCCTAACCTAATGATCATCTATGGTGACCAATTTCCAAAGGTTGCTAGAGCTCGGAAGAAGTCTCAATCTGTAAGAGATAAATTGGATTCTCTGATCACCTTATACCGCAAGCACCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAAATACGCATTTGATTGAGTTAGCCTCGGATGTAAAGGTGCCTTCAAATTGGGTTAAGGTCAATAGTACCAAGAAAACCATAAGGTATCACCCACCTGAAGTATTGGCTGCGTTAGACGAGCTCTCTCTGGCAAATGAGGAGCTCATGGTGGCATCTCGTGATGCTTGGGATAGCTTTCTAAGTGGATTCAGCAGATATTATGCAGAGTTTCAAGCTGCTGTTCAAGCACTGGCTTCCATCGACTGTCTGTATTCGTTAGCAATTCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTACATGATGATGAACCTGCACAGATACTTATATGCTCTGGACGCCATCCGGTTTTGGAAGGTACATTACAAGGCAATTTTGTCCCGAACGACACAAATTTGGATGTGAATGGAGAGCATTGTCAAATTGTAACAGGGCCAAACATGGGGGGCAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGGCTCAGGTCGGTTCCTTTGTACCGGCATTCTCTGCAAAACTTCATGTCCTGGACGGTATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACCTTTTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCACATCACGTTCCTTGGTCATAATTGACGAACTTGGGAGAGGTACAAGCACCCACGATGGTGTGGCCATTGCGTATGCAGCTTTGCATGATCTTCTCCAGCAGAAGAAATGTTTGGTCCTCTTTGTCACCCACTATCCTAAAGTTGCTGAGATTGAAAAGGAATTCCCAGCATCTGTGGGTGTATACCATGTCTCATATCTTACTTCACACAAAAATCCAAGCTTGTCAGGCCCAAAATCAACCGAGGAGGATGTGACTTACCTATATAAGCTCGTTCCTGGTGTTGCAAAGAGTAGTTTTGGTTTCAAGGTTGCACAACTTGCAGAGATACCTTTATCATGTATTGCACGGGCCACAGAAATGGGGGTCTGGTTAGAAGAAATGGTAACAAGAAGAGCAAAACGTAAATCCAAAGAACAGCATTTGCAAGAAGCATCAGCCAAGGGGTTGGAATGGGAAAGCTTCCAGTGCTTCCTCGAAGATGTCGCCATGTCAGAAGAGAGAATTGATGATTATGAGGAATTCTTTCTGTTCTTGAAAGCTACAATATGTTCTGCTGATGATATGGGAAAAATGTGCCATCAAATTTACCAAGCTAGAAACATGGCCATGAACTTGTTAGGAAGGTGATAGAGATTACTCATCTTGGAGTGGATAATCAATGAGTTTTTTTGGGTGATCAGTGAGGAGGAAAACCCCTCGAGCTGAGTGTACAAAGGGCATTAGTTCAGTTTGATTTCTGTTAGTGGTTTTCATTCTTTCTTTTCTTTTCTTTTGTGAAAGGGCCATCGTGTACAGAAATCCATCTAGTTTTGTAAGATCACAAACAGCCCATTTTGTTGGAGGAAATGATGAATTAGATTCATTCATGAAAGCCAGATTCTAAATCCTATGCCTTCTGTCAGAAAAGCTCTCATTGCAATATAGATATGCAACTTCTATTGCAACAGACATGGTACATTATTGGCCTTCCAGTGGAAGTCATTTACCCTTTAAAGTAGCTAAGAAAGATCTCAACTCTCTTGCCTTTCTCTCATGTTCAGGTGACTGATCAGTTTCTGTATCACTCAAATCAATTACATCAACCTTTTGACTATTTTTCTGTTGAAATTTTGAAACCTTACGGGTTTGCATTGCAGGTGAAGGGCTTAAGAGATTTATGACCTCAATCCTCTATGTGCTACAGCTACGAGCATGATCAACAACGATAGGCTCAACATCAAGAAAAAGCTCTTGGTTCCGTTCATCAAGACCAGTATCAGAAGTCTTTGAACTATTGGAACCTGGGAGAGATTATGAACTGTCGTGCTTTCAGATTCGATTTCAAGCAACAGAGTCTTTTATCAATTTCAACCACAGCAGCCTCCAACTTTTTTGTTTTAGTTTTGCGCTTATTTTGTTTTCTGCCTTCAGCTCTTTGCTCAAATTCTAAAATCATCTTGGAATAGGCACTGTAGAACATATAAAAAGAAACAAGGTGAGAAATAATAGTCTTAGCTTAGTGGTAGTTAAACATTTTAGTCAACCAACTAGATATTTTAATGTTATGGAAGAAACTGAGATGCTAAAATATAAGCAGTATACTTGTAAATAACAGAATCATTTCAGTAAA 4547 41.43 MGKQKQQVISRFFAPKPKSPSLSSSSSSSAAALTQPTQPLSPPKISATVTFSPSKRLISSALASQLTPPKSSKRPKLSPHTHNLLPSVPNPSLHRRFLDKFLEPTDDSFEPSNQNPRTSNDVDPKYTPLELQVVDLKKRYPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDRNFMTASIPTFRLNVHVRRLVSAGYKVGVIKQTETAAIKAHGSNKLGPFCRGLSALYTKATLEAAQNLGGAEEGCGGESNYLFCVVENSMLVGNLECRIENGVDVKIGTVAMEISTGDVIYREYDDNFMRSGLEAMLLSLSPAELLLGDPISKPTEKLLLGYAGPASNVRVEHVSRDCFKDGSALAEVVSLYENIDQDNLAEHHNPDSVLVGQKSDRTAIKEIVNMPNLALQALALTIRHLKKFGLERIVSLGSSFRPFSCKMEMTLSGNTLTQLEVLKNNDDGSQTGSLLQCMNHTLTIFGSRLLRQWITHPLCDRDMIIARQEAVSEIAASMVSSKVTQNNRVLDEEDSDVMVIEPELNYLLSLVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILFAGKQLQQFHIDEGDDNYSSESMIDSKLLRKMILSASSSGLINIAAKLLSMISKEAADQGDFPNLMIIYGDQFPKVARARKKSQSVRDKLDSLITLYRKHLGMRKLEFTSVSGNTHLIELASDVKVPSNWVKVNSTKKTIRYHPPEVLAALDELSLANEELMVASRDAWDSFLSGFSRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVHDDEPAQILICSGRHPVLEGTLQGNFVPNDTNLDVNGEHCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPAFSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILHHSTSRSLVIIDELGRGTSTHDGVAIAYAALHDLLQQKKCLVLFVTHYPKVAEIEKEFPASVGVYHVSYLTSHKNPSLSGPKSTEEDVTYLYKLVPGVAKSSFGFKVAQLAEIPLSCIARATEMGVWLEEMVTRRAKRKSKEQHLQEASAKGLEWESFQCFLEDVAMSEERIDDYEEFFLFLKATICSADDMGKMCHQIYQARNMAMNLLGR 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26693363 26712749 + XM_039034195.1 Bhi01g01330 24103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01330 1114 SMART DNAend 459 811 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 Gene3D - 784 1065 IPR027417 -
Bhi01g01330 1114 MobiDBLite consensus disorder prediction 104 125 - -
Bhi01g01330 1114 Pfam MutS domain I 127 237 IPR007695 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 MobiDBLite consensus disorder prediction 1 48 - -
Bhi01g01330 1114 PANTHER DNA MISMATCH REPAIR PROTEIN MSH3 101 1108 - -
Bhi01g01330 1114 SMART mutATP5 828 1028 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 Gene3D - 441 776 - -
Bhi01g01330 1114 ProSitePatterns DNA mismatch repair proteins mutS family signature. 909 925 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 Gene3D - 626 752 - -
Bhi01g01330 1114 SUPERFAMILY DNA repair protein MutS, domain III 444 782 IPR036187 -
Bhi01g01330 1114 MobiDBLite consensus disorder prediction 63 92 - -
Bhi01g01330 1114 Pfam MutS domain III 444 776 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 PIRSF Msh6 118 1079 IPR017261 GO:0006298|GO:0030983
Bhi01g01330 1114 Gene3D DNA repair protein MutS, domain I 117 245 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 1030 IPR027417 -
Bhi01g01330 1114 SUPERFAMILY DNA repair protein MutS, domain I 123 235 IPR016151 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 MobiDBLite consensus disorder prediction 17 48 - -
Bhi01g01330 1114 Pfam MutS domain II 274 421 IPR007860 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 Pfam MutS domain V 831 1026 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 SUPERFAMILY DNA repair protein MutS, domain II 252 374 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 MobiDBLite consensus disorder prediction 107 122 - -
Bhi01g01330 1114 Gene3D MutS, connector domain 250 438 IPR036678 GO:0005524|GO:0006298|GO:0030983
Bhi01g01330 1114 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 101 1108 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01330 K08736 MSH3; DNA mismatch repair protein MSH3 - csv:101214720 1890.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01330 Bhi-Chr1:26693363 Bhi09g00845 Bhi-Chr9:18620409 1.77E-83 dispersed
Bhi12g00484 Bhi-Chr12:15372492 Bhi01g01330 Bhi-Chr1:26693363 5.75E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01330 Bhi_Chr01 FPKM 12.181026 13.583698 8.101543 8.457383 10.382737 9.545815 10.673688 13.600728 13.602633 12.867203