Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01385 GTTAGAGGACAAAGGGAATAAAAATTAGTGTATAAATGAAAGAGGAAATATAATGAAAAGGGCATTGAGTCCTGGAGAAGAAGTGATGAATGCAACATTTCAATAATCAACCAATCCCTCCCGTGTGTGTTAAAAACCCTTTATAGGGTTTCTAAAATTTCTTCCATTTCCTTTTTCTTCTAAAATCTCTTCTACCTGTTTTTCACCATTTTCCCCACTTCTGTTTTTGGCTCTAAATCACTTCTTTTTGTGTTTGGGGGGCCTTTTTATTTTATTTTATTTTTCCATTTTTGAACCAAAAACAAAAACTCTCTTTTTCTGGGGTTTCTGGGTTTTGAGTTTTTTATGCTATTTTTGGTTTTTAAGCTATTTTCTTTCTCTCAAACTTTTTCAAAACTCTTTCTTCCCTTGTTTGTTTTGTAAGATATATACATAAATCCATTATTGAAGCACCCATTTTTTAAAATTTTGGCTCTGATCTGAACAACCCTTTAAAAGAAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAGAAAGTGAGTAAGAATAGAAAAAAATGGTGAGAGGAAAAGTAGAAATGAAACGGATAGAAAATGCGACAAGTCGGCAGGTAACGTTCTCAAAGAGACGAAATGGACTATTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCTGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTTGCAAGCTCTGAGATGCCAAGGATTGTGGAGCGCTATCGCAAATGTGCAAGAGATGCCAAAAACAATACCAAATTTGATAGACAACTTCAATTACAGCAGTCAAGGGTTGAAGCTGAAAGCATTAATAAGAAGATGGAGTTACTGCAACTTTCTCACAGGAAGCTATTGGGATATGGACTGGATTCTTGTTCCCTTGATGAACTTCAAGTACTTGATGCTCAGCTTCAACGAAGCCTCTTCCAAATTAGGGCCAGAAAGGCTCAGCTATACAAGGAGCAGCTTCAACAACTACAAGAAAAGGAAAGACTACTTTCCGAAGAAAAGAAGAAATTGTCTTTAAAGGTTACAGCTCACGGTGCCGCCGCTATGCACGGCTGCCGGAGGAGCCCAACTTCGGTAGTCAACACCCAATTGTCAATTTGATCGTACGTGGATGACATATATATATATTCAACGTTACCCAAACACAAAAAAGC 1200 36.58 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEMPRIVERYRKCARDAKNNTKFDRQLQLQQSRVEAESINKKMELLQLSHRKLLGYGLDSCSLDELQVLDAQLQRSLFQIRARKAQLYKEQLQQLQEKERLLSEEKKKLSLKVTAHGAAAMHGCRRSPTSVVNTQLSI 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27879666 27889884 + XM_039027135.1 Bhi01g01385 24158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01385 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi01g01385 197 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Bhi01g01385 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi01g01385 197 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Bhi01g01385 197 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g01385 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi01g01385 197 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Bhi01g01385 197 PANTHER MADS BOX PROTEIN 1 176 - -
Bhi01g01385 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi01g01385 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi01g01385 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi01g01385 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi01g01385 197 PANTHER MADS-BOX PROTEIN SOC1 1 176 - -
Bhi01g01385 197 Coils Coil 144 171 - -
Bhi01g01385 197 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01385 Bhi-Chr1:27879666 Bhi12g00330 Bhi-Chr12:9514524 9.78E-57 dispersed
Bhi01g01385 Bhi-Chr1:27879666 Bhi01g01386 Bhi-Chr1:27879666 2.85E-141 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
136 PF01486 K-box 4.20E-20 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01385 - - csv:101211542 277.715