Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01389 ATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTAACCTTCTCAAAGCGAAGAAATGGGTTATTGAAGAAGGCTTGTGAGCTCTCTGTGCTTTGTGATGTTGACGTTGCTCTCATCATCTTCTCTAGTCGTGGAAAGCTCTTTGAATTTGGGAGCACTGACATGAACAAGATCCTTGAGAGGTATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAAGTGGCAAAGCTGAGAGCCAAATATGAATCTCTTCGACGTTCCAATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAATCTAAAAGAGTTGCATAACCTTGAGAAACAGTTGGACAAAACTCTTTCACACACTAGACAGCGGAAGGCTGAGATAATGCTTCAAAAATTAGCAGACTTGCGCAAAATGGAGCAGGACCTTGGAGATCAAAACACTCAGCTCAAGTCAAAGCTTGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGATGGCGAGGAAGATCCAATGAATTACAAACTTGTGGGAGCTGACCCAAACATGAACATCCCTAGATACTTTGATCCCCAAGAAGAAGAGGGCAGAGGCATGATAGAAGCGGGGAATAACGACTTAATCCCAGATTGGCTACTTTGA 687 42.79 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSSRGKLFEFGSTDMNKILERYHQRCYSSGSSTNLDESDIQIEEVAKLRAKYESLRRSNRNFLGEELEPLNLKELHNLEKQLDKTLSHTRQRKAEIMLQKLADLRKMEQDLGDQNTQLKSKLEEEQQCMQEKEDGEEDPMNYKLVGADPNMNIPRYFDPQEEEGRGMIEAGNNDLIPDWLL 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28046262 28053122 - XM_039030520.1 Bhi01g01389 24162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01389 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi01g01389 228 Pfam K-box region 89 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g01389 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi01g01389 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi01g01389 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi01g01389 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi01g01389 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi01g01389 228 Coils Coil 92 112 - -
Bhi01g01389 228 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g01389 228 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 188 - -
Bhi01g01389 228 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bhi01g01389 228 Coils Coil 151 171 - -
Bhi01g01389 228 MobiDBLite consensus disorder prediction 167 188 - -
Bhi01g01389 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 - -
Bhi01g01389 228 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Bhi01g01389 228 Gene3D - 13 107 IPR036879 GO:0003677|GO:0046983
Bhi01g01389 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01389 Bhi-Chr1:28046262 Bhi12g02451 Bhi-Chr12:77158681 6.36E-57 dispersed
Bhi12g01461 Bhi-Chr12:47324506 Bhi01g01389 Bhi-Chr1:28046262 2.48E-21 dispersed
Bhi01g01389 Bhi-Chr1:28046262 Bhi01g02244 Bhi-Chr1:53579786 3.06E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
138 PF01486 K-box 2.70E-23 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01389 K09264 - csv:101212022 362.459