Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01420 TCTTACTTTTGTCGGTGAGGAAAACAATTTTCAAACTTTGTAAATAACTTTTCTTCGATATGTGGATTTTGAAAGGAATATGGTTTGGAAAGTTTATAACCGTTTTAGTATTAATATTATTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTAATAGTAAGAGAGCTTGAAAAGTAAATTGCACCTCGTTAGGCTATTCATCTAAAAAAATTAGAAAAGTTTTAGACAATTGTTAATTGTACCTATGTGTAGAATGCAAGTATTTGCAGGTCATTTCCCAACTGAGCCTCTCAGCCTCTTTCTTTTAAATCCCAAATGCTAAGTTCTATCAAAGCATTACAAGGAAAAACATGCTATGTAGAGCAGTCCCCAAACTTCTCAACAGAAATGAACTCTATCGTCTGGAAGAAAGCTGCTCTCAGCTTATTTCAATTTGCAATTCCAAATCCTTAAAAGAGGGCGTTTGTGTTCATAGCCCGATTATCAAGCTCGGTCTTCATGGTAATCTGTATCTGAGCAATAATTTACTAGCTCTTTATGCTAAACGATTTGGACTCAAACAGGCACGTAACCTGTTCGATGAAATGCCTGATAGAGATGTGGTGTCCTGGACCACGATGCAGGCTGCTTATGTCAGGAACAGAAGCTACATTGAGGCTTTTGAATTGTTTGATTTGATGCTAACATTGGGTCACTGTCCAAATGAGTTTACACTTTCGAATTTGATCCGATCGTGCTCTGAAACGGGAGAACTGGAGCTTGGAAGTTGTGTCCATGGCTATGTTATAAAGGGTGGCTTTGAGACGAAGCCAGTGCTGGGATGCACCTTGATTAATCTTTATGCAAAGTGTGATTTCTCTGAGGAAGCTTATGAAGTTTTCAGAAATATGGACGATGTCGATACTGTTACTTGGACCGTGATGATTTCTTCACTAGTGCAAGCACAGAAATGGGATGAGGCTCTTCAGTTATATATCACTATGATGAATTCTGGGGTCACTCCTAATGAGTTCACTTTTACAAAACTTTTAGCCACAACCAATTTTCTGGGTTTGAAATATGGGAAGTTACTCCATTGTCACATGATAACATTGGGAGTCAATCTGAACGTAGTTCTAAAGACGGCGCTCGTCGATGTGTATTCAAGATACCAAGAGTTAGAAGATGCAATGAAGGTTGCAAATCAAACACCTGAGAAAGACGTGTTTTTGTGGACCTCTATTATCTCCTTCTTCAATCAGAATTTGAAGGTCAAGGAGGCTATTGCTGCATTCCAAGAGATGAGAATGTCTGGAATTTTACCAAACAGTTTCACATATTCCAGTGCGTTAAGTGCCTGCACATCGATCCCGTCGCTTAAATTAGGTAAGCAAATTCACTTGCAGGTAATATTGGCTGGGTTGGAGGCTGACGTTTGTGCTGGGAGTGCACTAATTAATATGTACATGAAATGTTCTAACTTCATAGATGATGCCTTGAGAGTGTTTAGGACAATAACTTCCCCAAGTGTTATTTGTTGGACTTCTTTAATATCTGGTCTTGCCGAGCATGGTTGTGAACAAGATTGTTATAGATATTTTTTGGATATGCAAGCAGCAGGAGTGCAGCCAAATGCCTTTACTCTTTCTAGTATCCTTGGGGCCAGCAGTTCAGCGAAATCACAAAATCAAACATCGATGTTCCATGGATATATACTAAAAATGAGGGCTCACCATGATATTGTTGTTGGAAATGCTCTTGTGGATGCTTATGCTCGATCTGCAAAGGTGGATGATGCTTGCCGAGTGATTAGCACCATGAATCATCGGGATGCCATCACTTATACTAGCTTAGCCACGAGATTGAATCAGATGGGTGATCATGAAATGGCACTAAAAATCATTGATTCCATGCGTGCTGACAATGTTGAGATGGATGAAATTAGCTTGACAAGTTTGGTATCTGCATTGACAGGCCTAGGTATAGTTGAAACCGGGAAACAACTTCATTGCTATTCTTTGAAGTATGGCTTAGACAACACCTGCTCAGTAAAAAATAGTTTGATGGACTTATATGGCAAGGTTGGATGCTTGAAGGATGCCAATAAAGTTTTTGAAGAAATAAGCAAACCAGACGTCGTTTCTTGGAATGGAATGATATCTATATTAGCATTCAACGGGCATATCTCCTCTGCTCTTGCTGCCTTTGACAATATGAGATTAGCTGGCCTAGAGCCCGATTCAATCACATTCCTATCAATACTTTCAGCTTGCAGTCAAGGTGGTTTGGTTGATTTTGGAATGCACTACTTTCATTCTATGAAAGCAACCCATAAAATAGAGCCAGAATTGGATCATTATGCTTGTATAATTGATCTCCTAGGCCGCGTTGGACAACTAGAGAACGCAATGGAAATCGTAGAATCCATGCCATATGAGGCAGATGCTAAAATCTACAAGACATTGTTGAAAGCCTGCAATTTCCATGGGAACATGCTGCTTGGAGAAGATGTGGCAATAAGAGGACTTCAACTTAACCCAAACGATTCATCTTTCTATTTGCTGCTGGCCAACTTGTACGATGGATACAACCGACAAGATTTAAGTGCAAAAACTCGTAAGCTGATGCGAGATCGTGGAGTGAGGAAGAGTCCTGGCCAAAGTTGGATAGAATTACATAGCAAGATTCATCTCTTTGTCACAGGAGAGAGAACACATCCTCAAATCAATGACATCCAAGAAAAGTTAGAATTCCTCAGAGCTGAGTTCAAGAGTAGGGGGTTTATGTATCATGAAGATGAAAATTCATCCCATCATAGTGAAAAATTGGCTCTTGCATTTGGTCTTGTTAATTTGCCACCCACAGCTGTTGTACGAATAATGAAGAACATAAGCATTTGCAGAGAATGCCATGACTTCATATTGCTAGTAACAAAGGTGGTAGAGAGGGAAATAATTGTGAGAGATGGGCGCGGGCTCCATGTGCTAAAAAATGGAAGCTGCTCTTGCAGCCATTACTCATGATAATGTACCATCTTAATTGATTATGATCCTCAAAATCTTCTTCTGCCATTGATTTGATTATCATTTTATCCCCCGACTTGGGACAAAAAATTAAAGAGTTCGTGTCTAGATGG 3127 39.08 MLCRAVPKLLNRNELYRLEESCSQLISICNSKSLKEGVCVHSPIIKLGLHGNLYLSNNLLALYAKRFGLKQARNLFDEMPDRDVVSWTTMQAAYVRNRSYIEAFELFDLMLTLGHCPNEFTLSNLIRSCSETGELELGSCVHGYVIKGGFETKPVLGCTLINLYAKCDFSEEAYEVFRNMDDVDTVTWTVMISSLVQAQKWDEALQLYITMMNSGVTPNEFTFTKLLATTNFLGLKYGKLLHCHMITLGVNLNVVLKTALVDVYSRYQELEDAMKVANQTPEKDVFLWTSIISFFNQNLKVKEAIAAFQEMRMSGILPNSFTYSSALSACTSIPSLKLGKQIHLQVILAGLEADVCAGSALINMYMKCSNFIDDALRVFRTITSPSVICWTSLISGLAEHGCEQDCYRYFLDMQAAGVQPNAFTLSSILGASSSAKSQNQTSMFHGYILKMRAHHDIVVGNALVDAYARSAKVDDACRVISTMNHRDAITYTSLATRLNQMGDHEMALKIIDSMRADNVEMDEISLTSLVSALTGLGIVETGKQLHCYSLKYGLDNTCSVKNSLMDLYGKVGCLKDANKVFEEISKPDVVSWNGMISILAFNGHISSALAAFDNMRLAGLEPDSITFLSILSACSQGGLVDFGMHYFHSMKATHKIEPELDHYACIIDLLGRVGQLENAMEIVESMPYEADAKIYKTLLKACNFHGNMLLGEDVAIRGLQLNPNDSSFYLLLANLYDGYNRQDLSAKTRKLMRDRGVRKSPGQSWIELHSKIHLFVTGERTHPQINDIQEKLEFLRAEFKSRGFMYHEDENSSHHSEKLALAFGLVNLPPTAVVRIMKNISICRECHDFILLVTKVVEREIIVRDGRGLHVLKNGSCSCSHYS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28934238 28937364 - XM_039019030.1 Bhi01g01420 24193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01420 883 TIGRFAM PPR: pentatricopeptide repeat domain 489 523 IPR002885 -
Bhi01g01420 883 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Bhi01g01420 883 TIGRFAM PPR: pentatricopeptide repeat domain 287 319 IPR002885 -
Bhi01g01420 883 TIGRFAM PPR: pentatricopeptide repeat domain 85 119 IPR002885 -
Bhi01g01420 883 TIGRFAM PPR: pentatricopeptide repeat domain 590 624 IPR002885 -
Bhi01g01420 883 TIGRFAM PPR: pentatricopeptide repeat domain 388 422 IPR002885 -
Bhi01g01420 883 Gene3D Tetratricopeptide repeat domain 445 551 IPR011990 GO:0005515
Bhi01g01420 883 Gene3D Tetratricopeptide repeat domain 11 142 IPR011990 GO:0005515
Bhi01g01420 883 Gene3D Tetratricopeptide repeat domain 559 815 IPR011990 GO:0005515
Bhi01g01420 883 Gene3D Tetratricopeptide repeat domain 339 444 IPR011990 GO:0005515
Bhi01g01420 883 Gene3D Tetratricopeptide repeat domain 143 232 IPR011990 GO:0005515
Bhi01g01420 883 Gene3D Tetratricopeptide repeat domain 236 338 IPR011990 GO:0005515
Bhi01g01420 883 PANTHER BNACNNG15330D PROTEIN 502 816 - -
Bhi01g01420 883 PANTHER BNACNNG15330D PROTEIN 308 533 - -
Bhi01g01420 883 PANTHER BNACNNG15330D PROTEIN 18 404 - -
Bhi01g01420 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Bhi01g01420 883 Pfam PPR repeat 562 584 IPR002885 -
Bhi01g01420 883 Pfam PPR repeat 389 418 IPR002885 -
Bhi01g01420 883 Pfam PPR repeat 663 686 IPR002885 -
Bhi01g01420 883 Pfam PPR repeat 489 518 IPR002885 -
Bhi01g01420 883 Pfam PPR repeat 159 180 IPR002885 -
Bhi01g01420 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Bhi01g01420 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Bhi01g01420 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Bhi01g01420 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Bhi01g01420 883 Pfam E motif 705 767 IPR046848 -
Bhi01g01420 883 Pfam PPR repeat family 82 129 IPR002885 -
Bhi01g01420 883 Pfam PPR repeat family 184 227 IPR002885 -
Bhi01g01420 883 Pfam PPR repeat family 283 330 IPR002885 -
Bhi01g01420 883 Pfam PPR repeat family 587 634 IPR002885 -
Bhi01g01420 883 Pfam DYW family of nucleic acid deaminases 813 882 IPR032867 GO:0008270
Bhi01g01420 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Bhi01g01420 883 PANTHER - 18 404 - -
Bhi01g01420 883 PANTHER - 502 816 - -
Bhi01g01420 883 PANTHER - 308 533 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01420 - - - mcha:111011682 1505.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01420 Bhi-Chr1:28934238 Bhi01g01352 Bhi-Chr1:27122740 1.20E-180 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g789 . . . . . . . . . Cmo18g01310 . . . . . . . Bhi01g01420 . . . . Mch10g0115 . . . . . . . . . Cone5ag0899 . . Lsi05g01181 . . . . . . . . . . . . . . . Cma18g01279 . Car18g01193 . . . . . . . . . Cla05g00927 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014302 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 1 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01420 Bhi_Chr01 FPKM 0.0 1.320185 0.0 0.0 0.0 0.0 1.681825 0.0 0.0 0.0