Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01488 TCGCACCTCGCAACTGGTAAGTCACAACTTCATCTTGCTGCGTAATTTCTCTCTGCGGTTCTGCCGTCTACTACACTATCTCTGCTTCTTCAATCTTCTTCCTCTTTCCCTCCTTTACTTCCTTCTCCATGCCAATTTCGATTCTCTCTCTTTGATTTCATCTTTCAATCCTCCATGACCCAATAAATTTAGTTCTTTCCTCTTCCCTTTCCTTTCATTTCCCTATTGATTACTTTCAGTCATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACCTTAACTCTTTCTCGTTGTAGACACTGTATTTCCAATTCTATTCACGCTGCTACCAATACCAATTCTCACTGCATCAACCGTAACAAACCCAACGACCTCTTTCTCAACTCACCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTCGATAACGGGTCTCAACCCCCCGATCATCGGAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTGCGCAAAAGGGGTTGTTTTATGAGCACTTATGGGGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTGATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGAGGCGGCGGGGGCAGCTCCAATTCTGGTTCTGGTGGTGGGTTTTCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAGTTTGGGACCTAATTTTCCCACCCCGAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGTGTTTACAATCACTACAAGCGCATCTATCATGAATCACTACAAAGGCCAACAGGAGATACGGTTAACAACAAAACTGAGGCTGCAGATGTTGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTTGCCAAAACCTTGGCACGATTTGTTAATGTTCCATTTGTTATTGCGGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTATATTGATGAAGTTGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTGAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGTGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATACTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGCGGTGTTACAGACGCCATGGTTACTTCTTCTCTGTTAGAAACCGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTACAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTCAAAGAACACTGGAGCACGGGGTTTGCGATCAATATTAGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGGATATAATTGATGCTGTCATTGTTGATGAAGAATCCGTTGGGTCAGACAGCCCTGGTTCTGGTGTCAAAATTCTTTATGGAAAGGGTGCACTGGATCGCTATCTTTCAGGACAAAAGGCAACTAGTCAGGATTCAGAAAGAGAGCCAGAACCCGAAGGTGAAGCAGATCTTCCTTCAGTTGTTGCCAGCGGAATGTAACCAAGCATTTATGGAAATTTATGTATTATACCTGTAATGTTGTACATATTACTTGTCTACATTTATTAGTAATTCAAATGGGAAATTATGTCATAAGATTTACTGTTTCTCTAAAGAAAGTTTCTATCTTTCATTTTCAAGGTCCTGATACATTGAAAGACCACATCTTCTAAGCTTATCATTATTTCCAAGAGTTGCTTTAGTTGTTTTGAACCTTTTGAAA 2093 43.29 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNTNSHCINRNKPNDLFLNSPYHLVSFKPVSLRGDFVDNGSQPPDHRRIYQNSTKNLNHKLRKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSSNSGSGGGFSSNSNDGCWGGSSLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKTEAADVDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMSKNTGARGLRSILENLLMDSMYEIPDVRTGEDIIDAVIVDEESVGSDSPGSGVKILYGKGALDRYLSGQKATSQDSEREPEPEGEADLPSVVASGM 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30664510 30671248 - XM_039036405.1 Bhi01g01488 24261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01488 542 SMART AAA_5 224 386 IPR003593 -
Bhi01g01488 542 CDD AAA 225 336 - -
Bhi01g01488 542 SMART ClpB_D2_small_2 400 490 IPR019489 -
Bhi01g01488 542 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 3 408 - -
Bhi01g01488 542 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 408 540 - -
Bhi01g01488 542 Pfam AAA domain (Cdc48 subfamily) 224 376 IPR003959 GO:0005524|GO:0016887
Bhi01g01488 542 Gene3D - 414 477 - -
Bhi01g01488 542 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 408 540 - -
Bhi01g01488 542 PANTHER CLP PROTEASE REGULATORY SUBUNIT CLPX1, MITOCHONDRIAL 3 408 - -
Bhi01g01488 542 Gene3D - 156 412 IPR027417 -
Bhi01g01488 542 MobiDBLite consensus disorder prediction 513 542 - -
Bhi01g01488 542 Pfam C-terminal, D2-small domain, of ClpB protein 408 470 IPR019489 -
Bhi01g01488 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 486 IPR027417 -
Bhi01g01488 542 MobiDBLite consensus disorder prediction 122 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01488 K03544 clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX - csv:101215939 932.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01488 Bhi-Chr1:30664510 Bhi06g00100 Bhi-Chr6:2720467 0 dispersed
Bhi01g01488 Bhi-Chr1:30664510 Bhi01g01489 Bhi-Chr1:30664510 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1042 . . . . . . Bma10g01303 . . Cmo18g01359 . . . . . . . Bhi01g01488 Tan01g0095 . . . . . . . . . . . . . . Cone14ag0011 . . . . . . . . . . . . . . . . Cma16g00047 . . Car18g01245 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001359 1 5 2 3 1 2 5 2 1 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 3 2 3 4 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01488 Bhi_Chr01 FPKM 0.0 0.0 1.305924 1.474526 0.0 0.0 0.0 0.0 0.0 0.0