Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01505 CAAGTAAACTGTGGAAGGAAGTGGTGAAGCCGATGGATTCCTATTTGCATCATAACTTCCCTTCTTCTTCTTCTTCTTCTTCTTCCTTCTCTTCCTTGTCTTCCTCTTCTTCTTCTTCTAGGGTTTGTAATTTCAACAGTCTTATCGGACTTTCATTTGGAAACAAGCAGAAACACGGAATTGAAGGAACGGAGTGAGTTCTGAGGTCATTTTAATTTTATTTTTTTGGTTAGAACACAGGAACCTAACCTACTTACGACTTAGAGATATTGAAACCCTTTTACTCCACCAAATTGAATACAAACTGGACAAATCAAAGCCACTGACATCGAATTTGTTCTATGGCCGGAATTGCTTGGCATTGAAAAGAACTAAGCATTTTTTTTTGTCAATCCAAAACCCTAACATTTTGTGATATGGAGAAGTCTAGATCTAAGAGAAACTATTACTATGATCACCAAGACTATGATTCGGAGTCGATGGGTAGAACCAGACCTCGTTACAACAACAATCACTACCCCAATAATAACTATCGTCACCGGGGGAATGCTGTTCGACCATCTAAACCTCAAGACCAATCTCTTATGGTCACCACCACTTACAGGATACTCTGTCATGATGCTAAGGCCGGGGGAGTTATCGGCAAATCTGGTAGTATCATTAAGTCTATAAGGCAGCATACCGGCGCGTGGATCAATGTGCATGAGCTTGTTCCCGGTGATGAGGAGAGAATAATTGAGATATCGGACACTCGGCGGCGGGACCCGGAAGGTCGGATGCCGTCGTTCTCTCCGGCTCAAGAAGCACTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTCCTGAGGATGAGGAGGATGATTACGGTGGCGTTAGAGGAGGAGCTGGTGGTGGCGTTGGCCGTGTGGCGACAAGGCTTGTTGTGTCTAAAATGCATGTTGGTTGTTTACTTGGGAAGGGAGGAAAGATAATCGAGCAAATGAGGATGGAAACTAAGACCCAGATAAGGATTCTACCTAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTTCAGATTGTTGGAGATACAAATGCTGTAAAGAAAGCTATAGCTATTGTTTCATCACGCTTGAGAGAGAGTCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCTACATTCACCGGAACGTATTTTCCCTCCTGATGACGATTATGTTCCACATAATGCACGGCGATTACCAATGGATGGACGGCCATTTAGACCACGCATGTCTGCTTCTAATACAAGAGGCAATGACTATTCCAACCGTCAATCTAATTTTTTGGTGGAGCCTGGGGCTGTTCCTGTAAATGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATTGATAAGGTAGATAGTGTAATCGGAGAGTCTAATGGAATCATAGAATTACTTCGGAATGATGTTGGTGTGGATATCAAGGTTTCTGACCCTGTGACTGGTTCGAACGAACGGATTCTTATCATTTCCTCAGATGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGATAAGGATAACATTGTAACTACTAGGTTACTTGTACCATCAAGTGATATTGGATGTTTAGAGGGAAGAGATGGATCATTGTTAGAGATGAAGAGACTAACTGGTGCAAATGTACATATTGTGCCAAGAGAAGACCTTCCCATGTTCGTATCAGGGGCAGATGAGCTTGTACAGATCATAGGGGACATAAAAGCAGCTCGAGATGCACTTGTTGAGTTAACATCAAGATTACGGAATTACCTTTATAAGGAGCCGTTCCAAAAAGATGCAAGCCCTCCAGTCTCAGTTCAGGCCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGTAGCTCGTGAAGTTCATAGTGGAAATGATTCTTCAAGCACAGCCTACCAAAACGTGCAACCTTTTGGAACAGCACACCTTCTAAAGGAAACTGGAGGATCAAGCAATGAAACTGGTACGCAGAATGAAAATGATCGACGTGAAGATTTGCCTAGTGGGTTAAATAGGATCCCTGTGCCGCTTGTCACTCGGAGTACACTCGAAGTCGTGATACCAGAGCCAGCAGTCCCCAAGCTTATAACAAAATCAAAAAACAAGCTCGCTCAGATCAGTGAGTTGTCCGGAGCCAATGTTACGTTGGTAGAAGATAGACCAGATGTATCCCAGAAGATAATTCAAATATCAGGCACACCAGAGCAGGCTGAGAGAGCCCAGAGCTTGTTGCAAGGCTTTATTTTGAGCTTGCAAGAAGATGGTCCATAACCATAAGTTGTGGCCATTTGGTTCTACACTAAACTTTAGTTGGCCATAAAAGGTTATTGCCCCCACCAGGATCAACTGTAGTATTCAGGGGGCTCTTGCTCTCTTTTCAGCTGTTTTTCTTGAAGAGCCATGGAGGAAGACGGAGCAAGATTATAGCCACTGCCATGTAAATTTGAAATGTATAAGAATTTTCATTCTTCACTTCTTCTTTTCTTCCTTTTGCCGTTCCACAAATATTCATGTTTGTATTGTAGGAAGCAATATCGGTATCATTCATCTCAATAGTTATTGAAATCTAATTTTAAGCAGCTGTTAGTTTTTGTTAAGCTTAATTATGTCAATCATAGGTAAAGTGCAAATTTAGACCATTTCATGGTTGTTGTCTATTGTATTTCAATTTAAAATTTTGAATTCGGATTTTA 2827 41.85 MEKSRSKRNYYYDHQDYDSESMGRTRPRYNNNHYPNNNYRHRGNAVRPSKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGAGGGVGRVATRLVVSKMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDTNAVKKAIAIVSSRLRESQHRDRSHFHGRLHSPERIFPPDDDYVPHNARRLPMDGRPFRPRMSASNTRGNDYSNRQSNFLVEPGAVPVNDNMMPFYGEDLVFRILCPIDKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNERILIISSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREDLPMFVSGADELVQIIGDIKAARDALVELTSRLRNYLYKEPFQKDASPPVSVQASLGLEESSSNNNAVAREVHSGNDSSSTAYQNVQPFGTAHLLKETGGSSNETGTQNENDRREDLPSGLNRIPVPLVTRSTLEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVSQKIIQISGTPEQAERAQSLLQGFILSLQEDGP 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30824139 30829647 + XM_039035490.1 Bhi01g01505 24278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01505 662 MobiDBLite consensus disorder prediction 513 543 - -
Bhi01g01505 662 MobiDBLite consensus disorder prediction 513 578 - -
Bhi01g01505 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 52 112 IPR036612 GO:0003723
Bhi01g01505 662 CDD PCBP_like_KH 61 135 - -
Bhi01g01505 662 Gene3D K Homology domain, type 1 58 141 IPR036612 GO:0003723
Bhi01g01505 662 ProSiteProfiles Type-1 KH domain profile. 174 244 - -
Bhi01g01505 662 MobiDBLite consensus disorder prediction 24 51 - -
Bhi01g01505 662 ProSiteProfiles Type-1 KH domain profile. 59 131 - -
Bhi01g01505 662 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 564 - -
Bhi01g01505 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 325 385 IPR036612 GO:0003723
Bhi01g01505 662 Gene3D K Homology domain, type 1 585 656 IPR036612 GO:0003723
Bhi01g01505 662 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 564 - -
Bhi01g01505 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 578 658 IPR036612 GO:0003723
Bhi01g01505 662 Gene3D K Homology domain, type 1 173 253 IPR036612 GO:0003723
Bhi01g01505 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 409 496 IPR036612 GO:0003723
Bhi01g01505 662 Gene3D - 331 493 - -
Bhi01g01505 662 CDD KH-I 588 651 - -
Bhi01g01505 662 ProSiteProfiles Type-1 KH domain profile. 586 650 - -
Bhi01g01505 662 SMART kh_6 58 139 IPR004087 GO:0003676
Bhi01g01505 662 SMART kh_6 415 489 IPR004087 GO:0003676
Bhi01g01505 662 SMART kh_6 331 404 IPR004087 GO:0003676
Bhi01g01505 662 SMART kh_6 585 655 IPR004087 GO:0003676
Bhi01g01505 662 SMART kh_6 173 249 IPR004087 GO:0003676
Bhi01g01505 662 MobiDBLite consensus disorder prediction 282 308 - -
Bhi01g01505 662 CDD PCBP_like_KH 178 245 - -
Bhi01g01505 662 Pfam KH domain 418 483 IPR004088 GO:0003723
Bhi01g01505 662 Pfam KH domain 588 651 IPR004088 GO:0003723
Bhi01g01505 662 Pfam KH domain 61 110 IPR004088 GO:0003723
Bhi01g01505 662 Pfam KH domain 177 244 IPR004088 GO:0003723
Bhi01g01505 662 Pfam KH domain 335 385 IPR004088 GO:0003723
Bhi01g01505 662 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 255 IPR036612 GO:0003723
Bhi01g01505 662 MobiDBLite consensus disorder prediction 16 51 - -
Bhi01g01505 662 ProSiteProfiles Type-1 KH domain profile. 332 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01505 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - csv:101217605 1232.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01505 Bhi-Chr1:30824139 Bhi09g02548 Bhi-Chr9:69353328 2.97E-71 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01505 Bhi_Chr01 FPKM 2.288879 2.721378 2.247975 2.072469 10.57949 11.094286 9.241821 1.546315 1.544611 1.239289