Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01547 TTGGGGAACATACTTTAGCAATTAATAGTCTTCACCCACAGCATGCAATGAGAGTATCCATGGCTCTGATTTGGTATTTTGCTTCCATCCATCTCATCCTTTTGCTTTCTGTGTCAAAAAATGTTGCCCATCTTGAATTGAATGGATCTGTCAAAGAGAAAATAAGGTGTATGGAGAAGGAAAGAGTAGCACTTTTATCCTTCAAGCAAAAATTGGTGGATGAATATGATATACTCTCTTCTTGGGACACAGATGTCAACAGTGATTGTTGCAATTGGAAAGGTGTTGAATGCAGCAACACTACTACCACTCATCATCATATCATTGGACTTGATCTTCATGCCTCTGATAATTACGAAAGGTGTTTGAAGGACATCATTCCTCATTGGTTTTGGACCAACTTGTCTGCGAACTTGTACTACATAGATCTTTCTGGGAATAAAATCATGGGTGAAATTCCAGACTTGCCATTGAATTACTTCAAAGGAATACAGACTATTAATTTTGAGTCAAACAAATTTGTGGGGCGAATTCCCGCCTTTCTTTTTCAATCACGATTGCTCAGTCTTTCAAATAATAATTTTTCTGACTTAACATGCTTATGCAAAATTGGCATCTCTCCTTTAAAGGAATTGGATCTTTCTAACAACCAATTATCAAGACAACTTCCTAATTGTTGGGACTCCATGGACAACTTAGAGGCATTAAAATTGTCTGATAATTACTTTTCCGGAGACCTTCCACACTCTATGAGTAGCCTCATTCATTTGAATACCTTACTTTTACGCAACAATCAATTCTGTGGAGGGTTTGATTCTTTGTCCAGCTTGTCATCTTTGAAAGCCATTGATGCAATGAATAACAATTTATTTGGAGCAATACCATCGTGGATTGGATCAAAGTTGCCTAATTTGACTTACCTGAATTTGAAGTCAAATAACTTCTATGGAAATTTGCCTTCAAGTATTTGCAATCTCAAACGGATTCATGTATTGGATATTTCATCCAACAATATATCTGGAAGCATACCAACCTGCATTCATAATTTCCAAGCCTTCAAACAAACATCAGACCCAAGTAATGATTTTGATGTTGACGATAATGGTATGGAGTTCATATTTTGGAAAAGAGAAAGGAGATTACTCGTGTCAGCTGGTTATGAAGGTTTGGTAATGGTGTTGAAAGGTAAAGAGAGACTGATCATAGGAAAAGTATTAAGATTTGAAAGATTTATTGATTTATCTTGCAATCATTTGACCGGAAAAATTCCTGATGAAATCACCGAGCTTGTTGGTTTGATTACTTTGAATCTCTCCAACAATGAATTAACAGGTCCAATTCCTGGTAACATGGGTCAACTTCAATCATTGGACTCTTTGGATTTATCAAGAAATCATTTATACGGTCCAATTCCAGCTACTCTTTCTCAAATATCAAGGTTGTCAGTATTGGATTTGTCATATAATAACCTTTCAGGAAAAATTCCCACAAGCACTCAGCTTCAAAGCTTCCAAAATTCTTCTTATGAAGGAAACCCTTATCTTTGTGGAGATCCGTTGAAAAAGTGCTTTAATGAAATCCCTCGAGAGCCAAATGATATTCATGTTAATGAAAATAAGAATGAAGATAGCTGGTTCGTACTTGGAGAATTTTTTATCAGCATGACATTTGGATATATTGTTGGTTTCTGGGGTATATTTGGCACTTTGTTACTTCATAAGAGATGGAGACATGCGTACTTCAAATTTCTAATGAACACAATCCATTGAAATCAGGTACAGGTACCTTGGAGATATCACTATCAATCATTGATTTGATATATAGTGATAGAAGTCTATTACCATCTATTACTGAAAATTGGAAATTTCAGGCCTTCAACATTTTTTTTTTGTACCTTTATTGGGCTTTTTGGATATT 1917 35.47 MRVSMALIWYFASIHLILLLSVSKNVAHLELNGSVKEKIRCMEKERVALLSFKQKLVDEYDILSSWDTDVNSDCCNWKGVECSNTTTTHHHIIGLDLHASDNYERCLKDIIPHWFWTNLSANLYYIDLSGNKIMGEIPDLPLNYFKGIQTINFESNKFVGRIPAFLFQSRLLSLSNNNFSDLTCLCKIGISPLKELDLSNNQLSRQLPNCWDSMDNLEALKLSDNYFSGDLPHSMSSLIHLNTLLLRNNQFCGGFDSLSSLSSLKAIDAMNNNLFGAIPSWIGSKLPNLTYLNLKSNNFYGNLPSSICNLKRIHVLDISSNNISGSIPTCIHNFQAFKQTSDPSNDFDVDDNGMEFIFWKRERRLLVSAGYEGLVMVLKGKERLIIGKVLRFERFIDLSCNHLTGKIPDEITELVGLITLNLSNNELTGPIPGNMGQLQSLDSLDLSRNHLYGPIPATLSQISRLSVLDLSYNNLSGKIPTSTQLQSFQNSSYEGNPYLCGDPLKKCFNEIPREPNDIHVNENKNEDSWFVLGEFFISMTFGYIVGFWGIFGTLLLHKRWRHAYFKFLMNTIH 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31685529 31688681 + XM_039022171.1 Bhi01g01547 24320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01547 573 PANTHER BNAC08G45300D PROTEIN 28 100 - -
Bhi01g01547 573 PANTHER BNAC08G45300D PROTEIN 108 571 - -
Bhi01g01547 573 SUPERFAMILY L domain-like 168 505 - -
Bhi01g01547 573 ProSiteProfiles Leucine-rich repeat profile. 464 486 IPR001611 GO:0005515
Bhi01g01547 573 Pfam Leucine rich repeat 396 451 IPR001611 GO:0005515
Bhi01g01547 573 Pfam Leucine rich repeat 171 226 IPR001611 GO:0005515
Bhi01g01547 573 PANTHER OS10G0469600 PROTEIN 28 100 - -
Bhi01g01547 573 PANTHER OS10G0469600 PROTEIN 108 571 - -
Bhi01g01547 573 Pfam Leucine rich repeat N-terminal domain 44 83 IPR013210 -
Bhi01g01547 573 PRINTS Leucine-rich repeat signature 193 206 - -
Bhi01g01547 573 PRINTS Leucine-rich repeat signature 438 451 - -
Bhi01g01547 573 SUPERFAMILY L domain-like 107 167 - -
Bhi01g01547 573 Gene3D Ribonuclease Inhibitor 35 102 IPR032675 -
Bhi01g01547 573 Gene3D Ribonuclease Inhibitor 103 511 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01547 - - K13466 bhj:120070273 914.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01545 Bhi-Chr1:31685526 Bhi01g01547 Bhi-Chr1:31685529 1.07E-06 dispersed
Bhi01g01547 Bhi-Chr1:31685529 Bhi01g01565 Bhi-Chr1:32195275 2.11E-06 dispersed
Bhi01g01547 Bhi-Chr1:31685529 Bhi01g01550 Bhi-Chr1:31685778 0 proximal
Bhi01g01546 Bhi-Chr1:31685526 Bhi01g01547 Bhi-Chr1:31685529 1.07E-06 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g829 . . . . . . . . . . . . . . . . . Bhi01g01547 . . . . Mch10g0565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000631 0 9 0 0 0 3 1 3 2 3 2 1 1 1 2 1 1 9 1 0 2 3 3 8 11 1 2 4 3 9 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01547 Bhi_Chr01 FPKM 1.219973 1.589591 1.151634 1.26084 1.683046 1.398864 1.744444 1.456156 1.933458 2.537311