Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01562 AGATGGCATATTTTTTCATTCCATCAGCCAAAATGATATCTCTGACTGTAATATGGTATTTTACTTCCATCCAATATTTTTTCCTTCTGCTTTCCATGCCAGCAAATAATCTTGCACTGGAAATCAAATGCATGGAAAGCGAAAGACAAGCCCTGTTATCCTTGAAGCAAAACCTCATAGATAGATATGATTTTCTCTCTTCTTGGAGAACACAGGCCAATCACAAAGCCAATGATGATTGTTGCAATTGGAGAGGTGTTGGTTGTAGCAACAATACAGGTGCTGACCATCATCATATCGTAAGCCTTGATCTTCATAATAAAGGTTTGATGGGTGAGGTTGGTTCTTCCTTAACTCAATTATTGCATCTCACCTACTTAGATCTTAGTTATAATCAGTTTGATCAAATCTTGATTGAGGATATTGGTTCTCTTATCAATTTGAATTACCTCAACTTGTCCTATAACAAGTTGAGTGGAAGTATTCCTCAAAGTTTGGGACAATTATCCAACTTAGAGTATTTGAATCTTCAGTCTAATTTATTGGAGGGTGAAGTTTCTGAAGTTCATTTCTCAAAGCTTAAAAATTTAAAAGCTTTGGATCTATCTGACAACTTGTTGAGATTAAACTTCAACTCAGCTTGGATTCCTCCTTTTCAAATGCAGTCAATAAGTTTGAGAAATTGTACATTGGGCCCAGATTTTCCCAAATGGCTTCAAACACAAAATTTCTCTGTTCTTGATATTTCAGAGAACATAATTTCAGACGAGATTCCCAGATGGTTTTGGAATAACTTGTCCCCAAACTTATTGTTTCTTGATATTTCCTTCAATTATATCAAGGGGGAAATCCCAAATTTGTCCTTGAAATTCAAAAGGATGCCTGTAATCATTTTGGGAGTGAATGAATTTGAAGGTAAAATTCCAGCCTTTCTTTTTGGAGCACAAAACCTTGACCTTTCAAGAAATAAATTTTCTGATATATCAAGTTTGTGTGAAGTCAACGATTCATCCCCTTTATATCTCTTGGATACTTGCAGCAACGAAATGTCTGGCCAACTCCCTAATTGTTGGAACCATATGCTGAATTTAGCATCCTTAAGTTTGGCCTATAATTATTTTTCTGGAGACATTCCACATTCTTTGAGTAATCTCACAAGACTCAAATCTCTAAATTTGCGAGAAAATTATTTCTCTGGGAAGTTTCCTTCTTGGTTTAACTTCACAGATTTGATAATCTTCGATGCAGTTGACAACAATTTATCTGGAAATTTACCGTCATGGATCGGATCAAGGTTGCCAAATTTGGTTCGTTTGCTTCTCAAGTCAAATCACTTTCATGGAAACTTACCTTCAAGTCTTTGCAACCTCAGAAGGATTGAAGTGCTGGACATTTCATTCAATTATAATATTTCAGGAAGCATACCAACTTGCATCTATAATTTTGATGTCTTGACAAAAATGTTTAATCCATCAACTGTTCCTGATTACATAAGAGATTTGGTCATGATGTGGAAAGGCAAAGAGATGCTAATTCATGGTAGAAATTTACAGCTTCAAAGGAGTATTGACCTGTCTAGCAATCGTCTGACAGGAGATATTCCAAGCGAAATCACACAGCTTGTTGGTTTAATTTCTTTGAATCTCTCGAGGAATGAGTTAACAGGTCAAATTCCTTACAACATGGGTCAACTTCAATCGTTGGATTTTCTGGATCTATCAAGAAATAATTTGTGTGGTTCAGTTCCATTTAGTTTGTCTGAAATGCCCAGATTGAGTGTGTTGGATCTGTCCTACAACAACCTTTCAGGAAATATTCCTATTGGAACTCAACTTCAAAGCTTTCCAACTTCTTCCTATGAAGGCAACCCTTGTCTTTGTGGCGATCCACTTAAGAAGTGCGAGCTGAGCATCAACAATGGTTTTTATTTTGAGAATAATATCAATGAAAATGAAGAGGCTGATCAAGACAAACTCATAATACAAGATCTGCTTATTGCCATTTCATCTGGATTTATAATTGGCTTTTGGGGAATCTGTGGCAGTCTTCTACTCTTTAAGAGATGGAGACATACCTGCTTCAAGTTTTTAATAAGTATAACTGAGAAAGTTATTTGAAGCAAAGAAAACCAGGCAAACAAAAGCCTACTTACCACAAAAAACCGACTTCAAAAGGCCTCTGGATCGCTCAAACTACCTAGAACTGGACCCGAACCTCTCGAACCGAACCTCCAATGCTAAAAAAATGGGCAAAACCATCAGTACCATCAAGCATGGAGTATGCCTTCAAGCATCAAGTATTTCACTAAATACCATCGAGTAGCATTGATTACCATCGAGTATGGCAACATGCATCGAGTATTTCACAAAATGTCATCGAGTTGC 2384 36.58 MAYFFIPSAKMISLTVIWYFTSIQYFFLLLSMPANNLALEIKCMESERQALLSLKQNLIDRYDFLSSWRTQANHKANDDCCNWRGVGCSNNTGADHHHIVSLDLHNKGLMGEVGSSLTQLLHLTYLDLSYNQFDQILIEDIGSLINLNYLNLSYNKLSGSIPQSLGQLSNLEYLNLQSNLLEGEVSEVHFSKLKNLKALDLSDNLLRLNFNSAWIPPFQMQSISLRNCTLGPDFPKWLQTQNFSVLDISENIISDEIPRWFWNNLSPNLLFLDISFNYIKGEIPNLSLKFKRMPVIILGVNEFEGKIPAFLFGAQNLDLSRNKFSDISSLCEVNDSSPLYLLDTCSNEMSGQLPNCWNHMLNLASLSLAYNYFSGDIPHSLSNLTRLKSLNLRENYFSGKFPSWFNFTDLIIFDAVDNNLSGNLPSWIGSRLPNLVRLLLKSNHFHGNLPSSLCNLRRIEVLDISFNYNISGSIPTCIYNFDVLTKMFNPSTVPDYIRDLVMMWKGKEMLIHGRNLQLQRSIDLSSNRLTGDIPSEITQLVGLISLNLSRNELTGQIPYNMGQLQSLDFLDLSRNNLCGSVPFSLSEMPRLSVLDLSYNNLSGNIPIGTQLQSFPTSSYEGNPCLCGDPLKKCELSINNGFYFENNINENEEADQDKLIIQDLLIAISSGFIIGFWGICGSLLLFKRWRHTCFKFLISITEKVI 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32087186 32096206 - XM_039023083.1 Bhi01g01562 24335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01562 704 PRINTS Leucine-rich repeat signature 147 160 - -
Bhi01g01562 704 PRINTS Leucine-rich repeat signature 588 601 - -
Bhi01g01562 704 SMART LRR_typ_2 144 168 IPR003591 -
Bhi01g01562 704 SMART LRR_typ_2 588 611 IPR003591 -
Bhi01g01562 704 SMART LRR_typ_2 120 143 IPR003591 -
Bhi01g01562 704 SMART LRR_typ_2 432 456 IPR003591 -
Bhi01g01562 704 SMART LRR_typ_2 540 564 IPR003591 -
Bhi01g01562 704 Gene3D Ribonuclease Inhibitor 216 291 IPR032675 -
Bhi01g01562 704 Gene3D Ribonuclease Inhibitor 42 215 IPR032675 -
Bhi01g01562 704 Pfam Leucine Rich repeat 121 133 IPR001611 GO:0005515
Bhi01g01562 704 SUPERFAMILY L domain-like 43 330 - -
Bhi01g01562 704 Pfam Leucine rich repeat 520 577 IPR001611 GO:0005515
Bhi01g01562 704 Pfam Leucine rich repeat 146 206 IPR001611 GO:0005515
Bhi01g01562 704 SUPERFAMILY L domain-like 314 631 - -
Bhi01g01562 704 Gene3D Ribonuclease Inhibitor 313 639 IPR032675 -
Bhi01g01562 704 PANTHER BNAC08G45300D PROTEIN 30 176 - -
Bhi01g01562 704 PANTHER BNAC08G45300D PROTEIN 140 703 - -
Bhi01g01562 704 ProSiteProfiles Leucine-rich repeat profile. 146 168 IPR001611 GO:0005515
Bhi01g01562 704 Pfam Leucine rich repeat N-terminal domain 45 89 IPR013210 -
Bhi01g01562 704 PANTHER OS10G0469600 PROTEIN 30 176 - -
Bhi01g01562 704 PANTHER OS10G0469600 PROTEIN 140 703 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01562 - - K13466 bhj:120071050 1368.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01562 Bhi-Chr1:32087186 Bhi01g01565 Bhi-Chr1:32195275 0 dispersed
Bhi01g01561 Bhi-Chr1:32083874 Bhi01g01562 Bhi-Chr1:32087186 0 tandem
Bhi01g01562 Bhi-Chr1:32087186 Bhi01g01563 Bhi-Chr1:32092124 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g822 . . . . . . . . . . . . . . Sed01g3718 . . Bhi01g01562 Tan01g0804 Cmetu09g0373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000631 0 9 0 0 0 3 1 3 2 3 2 1 1 1 2 1 1 9 1 0 2 3 3 8 11 1 2 4 3 9 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01562 Bhi_Chr01 FPKM 0.429746 0.0 0.221943 0.391212 8.432973 6.550599 6.609475 0.776339 0.8583 0.652173