Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01650 TTTCTGATCCAGAGCTTTGATTTTCATCTTTCTTTCTGTTTTTCCATTTCTGGGATTTCATTGTTCATACCCATATCTTGGTTTCCTCTGTTACTTAGCCAAAAAGTTGAGTGGTTTTCGTTTTAGATTTTCCCCTTTTTCTTCTTTTGTTGTAGCAAAGGGAGTTTTTTGTTGCCAGTCCTTTATTAATCATTCAGATCTTTCGTGGTTTGTTCTCAGTTCAAGAGCTTGATCTGATTTTAGCTTCCTGATTGAGCTCGAAACATCTGTTACAGCCATAGGCACATGACAACTGGTATATAATCTACCAGGAAATTGTTGTAAAGAGGCGTCAAGATTTAGTATTATCAGTTTTGTGTAAAATGTCATTCCGAAGCATTGTTCGTGATGTGAGAGATAGTATTGGGAGCTTATCTAGACGGGGGTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCACTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCCAGCCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACGTGGCCTTCACGAAAAAATGTCGTTGCCTGTGCTGCAGTATGCCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGTCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCGCTAAAGCAGCCCGGACCACGCGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCATCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGGAAGTTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAATTTTCTCGGAACAAAATTCATTGTCTATGACACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCTGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTTTCGCCAAAAGTCCCAACTGGCAGTTACAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTCGATGCTGGTGGCACTGTTCCAGGCCAACCCGAGCTCCTCCCTCCCAACTCTCTCGACGACTCGTTTCGTAGTGCATCCTTCTCCAAGGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCTGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTAAAAAACAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAACTTTCGTGGGCGAGTAACCGTTGCATCAGTGAAGAACTTTCAGTTGATTGCAGCTATACAACCAGCCGCTGGCGCTCCAACACCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTTGGTAAAGACATGTTCACGATGGACTATCGATATCCGCTGTCTGCTTTTCAGGCCTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAAAGAAAAGTATCCAAAGCTAATGCATATGATGAGCAGAAAAGAAAAAAAGTAACAACACCCCACTTTTATGCCTCTTTTTTCCCCCCCTTTTTTCCACCCCCTTAACTTTTGGATTTCACTCTATTAGTTGTATTCCTCTTCTTGTCATTTCATGGTTAGGTTAGTGAAATAGTTATTGTTGTGGCTATTGGTGTAAAAGTTAATTGTAACTGGGACATCTTCCCTCATAACAGCTCTTACATGTGCAACTTCAAAAACTTTGAAAAGGAATGAAGGCAAAAAGCCCTTTTTACCCCTCTC 1949 43.56 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPRDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 34648597 34652568 + XM_039041387.1 Bhi01g01650 24423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01650 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
Bhi01g01650 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Bhi01g01650 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Bhi01g01650 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Bhi01g01650 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Bhi01g01650 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Bhi01g01650 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Bhi01g01650 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Bhi01g01650 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Bhi01g01650 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Bhi01g01650 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Bhi01g01650 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Bhi01g01650 428 PANTHER TUBBY-RELATED 1 428 - -
Bhi01g01650 428 Pfam Tub family 115 423 IPR000007 -
Bhi01g01650 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Bhi01g01650 428 Pfam F-box domain 54 100 IPR001810 GO:0005515
Bhi01g01650 428 Gene3D - 49 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01648 Bhi-Chr1:34648433 Bhi01g01650 Bhi-Chr1:34648597 0 dispersed
Bhi01g01650 Bhi-Chr1:34648597 Bhi04g02131 Bhi-Chr4:57228311 0 dispersed
Bhi01g01649 Bhi-Chr1:34648442 Bhi01g01650 Bhi-Chr1:34648597 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
155 PF01167 Tub 8.00E-117 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01650 K19600 - csv:101216314 867.84