Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01678 GCTATGGAAGTAAATAACAATGAATTAGTATGGAGTAAACACGATCAAAGGAATCTAATTCCCTTTACATTGAGACCTATTACAATTGGTACGTGAATGTGAACTCATAATGATTACGACAATTTTAATTACGGAGCAGTAAACGTGGTCGAAATACATTAAATAGAGACAAGCACATAGTGATGACTTGATTGAAGAATACTTGGGTACAGTTGAATACACCCGCCCGTGTACCGGCATAAGTAACTAAAGCTAGTTCCAAGTGTAACTAGGGATAAACCATGGTTAGGTTAAAGAAATAGTTGCACCACACGTGTGGGGGAGAAGTCAGATAAGGGGCAGAGGAACAGAGTTACAGAAGGAGAAGGCAGTGTTTGTTTTCTCTTTTTATCTCTAAAACTCTCTGTTTTGAGTGTTGGGTATGTCTCTCTGTTCCATTCAATTTTAAGAGAGAAGAAGAAACAGAGTCAAAAAAAGGTAAGACTGAAAAATTTGCAGAGTGGTCAGATTTGTTAGTATTAGTATTAGTAGTTCGTCCCCCACTTGTTTGACAAAATTTCTAGCAGAGAGTAAATAGTTATAGAGAAAGAGAATCAAAGCATAAGAAAACATGCCTGGGACTGGGAGTGTTGCTGTTGAACCTTTGGATTTGAGCGTACACATTCCATATCATTTCAGATGCCCAATTTCTCTTGAGCTCATGCGTGATCCTGTCACCGTCAGCACCGGTCAGACCTACGACCGTTCAAGCATAGAGTCATGGGTCGCCACCGGCAACACCACTTGTCCGGTCACTAGGGCTCCACTCACCGACTTCACGCTCATCCCTAACCATACACTGCGCCGGTTAATCCAGGACTGGTGCGTTGCGAATCGGTCTTACGGCGTTGAGCGGATTCCGACTCCGAAGCAACCGGCGGAACCGTCTTTGGTTCGGTCTTTGCTTAGCCAAGCTTCGTCGAGATCGAGTGGTTTGAATTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCCCGTGACTCGGATAAGAATCGGTCTCTGATTTCTTCGCTTAATGCTCGTGAAATTCTTCTGGATGTTGTGTTTTCGAATTTGGATTCGGATTCGGATTCGTTTTCACCTGATTTGAGCCGCGAATCGCTTGCGCTTCTTGTGATGTTACCGCTGACGGAATCTGAGTGTGTTCTTGTTGCGTCTGATCCGCAACGGATTGGTTATCTGTCACATCTTCTGTTTGATTCTTCGATTGAAGTCCGAATCAATGCCGCGGCGTTGATTGAAACTGTGATTGCCGGAACTCGAGCGTCGGAGCTTCGAAGCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTAGTCGAAATTCTCAGAGATCCAACGGCGTATCCACGAGCACTCAAAGTCGGAGTTAAAGCCTTATTCGCTCTCTGTTTGGTGAAACAAACCAGGCACAAGGCAGTTTCCGCCGGCGCCGCCGAGATTATCATCGACCGATTTCCCGATTTGGAGAAGTACGACGCTGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATTCCAACCGGTTGCGATGCGTTTGCAGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAAGTTATTCTGAAGATCTCGGACAGAGCGACGGAGTCAGCTGTCGGAGCTCTGGTGTCGTTATGTTCGGCATCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGGATTTTAACACAGTTGTTGTTGCTGGTGCAAAGTGATTGTACGGAGCGAGTAAAACGGAAATCGCAGGTGCTGCTGAAGCTTCTTCGAGATTCATGGCCGCAAGAATCCGTTGGAAATTCCGACGATTATGGTTGCAGTGAAATTGTGGTACCGTTTTGTTAATTGTGGAGTTTAACATTTTGGATTCTCAAATCTCCATAGATTGTTGGGTAAGTTTGAAGATTCATCAAATGGAACAAAGAACAAAAACTACAGAGAAAGAGAGACAACAAATGGAAGAGATGAAGTTGCAATAGTTTTTCTGTATGTAATTTTTTGTACGTAAATTTTTTTTCCGCTTAATTTCTTTCAACAAAAAAAAAAAAAAAAAAAAAATCCATCTATCGTTAAGTTTTTATTTGTAAGATTTTTGACATTTGTTACATCATTTCCTCTTAATGATATTTTGACATGATTAATTTCCTCAAA 2194 43.48 MPGTGSVAVEPLDLSVHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLSQASSRSSGLNLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSDSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIETVIAGTRASELRSQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYGCSEIVVPFC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35187901 35190142 + XM_039019329.1 Bhi01g01678 24451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01678 425 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 421 - -
Bhi01g01678 425 Gene3D - 94 299 IPR011989 -
Bhi01g01678 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Bhi01g01678 425 CDD RING-Ubox_PUB 22 63 IPR045210 -
Bhi01g01678 425 Gene3D - 300 401 IPR011989 -
Bhi01g01678 425 Pfam U-box domain 18 89 IPR003613 GO:0004842|GO:0016567
Bhi01g01678 425 PANTHER WDSAM1 PROTEIN 9 421 IPR045185 GO:0061630
Bhi01g01678 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Bhi01g01678 425 SMART Ubox_2 21 84 IPR003613 GO:0004842|GO:0016567
Bhi01g01678 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842|GO:0016567
Bhi01g01678 425 SUPERFAMILY RING/U-box 15 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01676 Bhi-Chr1:35187873 Bhi01g01678 Bhi-Chr1:35187901 0 dispersed
Bhi01g01678 Bhi-Chr1:35187901 Bhi07g00411 Bhi-Chr7:18495586 1.57E-68 dispersed
Bhi01g01677 Bhi-Chr1:35187899 Bhi01g01678 Bhi-Chr1:35187901 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01678 - - bhj:120067754 775.393