Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01683 ATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCGTCAATCCTGCGGCGAACGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTTGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATTTTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATCAAGAATTTAGACAAGGCCATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCAGAAAGCAATTGAGAAGCTGAATGGCATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACCACTGAAGAGGATTTGAACAAAGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCCCTTAATGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAGTTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAACTGTTTGCTCCATTTGGCACAATCACCTCTTGCAAGGTCATGCGTGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATTGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTCCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATATCCCCCTGGTGGTCCAGGTATTGGACAGCAGGTGTTTTTTGGTCAAGGTCCTCCTGCAATGATTCCTTCTCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAGCAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTACCCATGCCTGGTGTTGCTGGAGGCATGTTTTCCGTTCCATATGATATGGGAGGTATGGCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTGGCAAATGCTACACCAGACCAACAGAGAACAATGCTGGGAGAGAATCTTTACCCGCTAGTGGAACAGCTGGAGCCTGAAAATGCGGCCAAGGTGACTGGAATGCTTCTGGAGATGGATCAGACTGAGGTTTTGCATTTACTCGAGTCCCCAGAGGCTTTGAAGGCAAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCCGCAGCTCAGCAGCAACAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACTGAGAACCTCGTGTCGTGAGTTGCTTGTGTGTTCATAAAGCTCCCCTGATTCATGAAAAGAAACGTGTAGTAGTTGTGTGATACGATTGACTGGTTTGTTTATTTGTGGAGACTGCGGTACTGACATCATATTTGTTTGTACTGGTTTTTATCTCCTGAAGACTGCTGACATTTTCTTTTGTTTTTAGTTTTTGGTACTCTCTTTTTCCGTAGGATGAAGGCTTTTTGTTTTTGTTTTTTTTTGTTTTTTTTTTTTCTGTTTTAACATTAATCCGAGGTAGTGCTACTGTCTTCTGTTA 2242 44.87 MAAQVQAQPQNAISGVNPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALIEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVPMAASVAPRMPIYPPGGPGIGQQVFFGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMALRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS 653
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 35356925 35361898 - XM_039036097.1 Bhi01g01683 24456
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01683 653 SUPERFAMILY PABC (PABP) domain 495 645 IPR036053 GO:0003723
Bhi01g01683 653 Gene3D - 118 197 IPR012677 -
Bhi01g01683 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Bhi01g01683 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Bhi01g01683 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Bhi01g01683 653 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Bhi01g01683 653 Gene3D - 198 293 IPR012677 -
Bhi01g01683 653 SUPERFAMILY RNA-binding domain, RBD 208 392 IPR035979 GO:0003676
Bhi01g01683 653 MobiDBLite consensus disorder prediction 473 494 - -
Bhi01g01683 653 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Bhi01g01683 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Bhi01g01683 653 CDD RRM4_I_PABPs 310 388 - -
Bhi01g01683 653 Gene3D - 548 629 - -
Bhi01g01683 653 CDD RRM2_I_PABPs 115 191 IPR045305 -
Bhi01g01683 653 CDD RRM1_I_PABPs 30 109 - -
Bhi01g01683 653 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Bhi01g01683 653 Gene3D - 1 117 IPR012677 -
Bhi01g01683 653 Gene3D - 294 396 IPR012677 -
Bhi01g01683 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Bhi01g01683 653 SMART poly_2 564 627 IPR002004 GO:0003723
Bhi01g01683 653 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Bhi01g01683 653 PANTHER POLYADENYLATE-BINDING PROTEIN 18 634 - -
Bhi01g01683 653 PANTHER RNA BINDING PROTEIN 18 634 - -
Bhi01g01683 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Bhi01g01683 653 SMART rrm2_1 312 384 IPR003954 GO:0003676
Bhi01g01683 653 SMART rrm2_1 118 190 IPR003954 GO:0003676
Bhi01g01683 653 SMART rrm2_1 209 281 IPR003954 GO:0003676
Bhi01g01683 653 SMART rrm2_1 30 103 IPR003954 GO:0003676
Bhi01g01683 653 SMART rrm1_1 118 190 IPR000504 GO:0003723
Bhi01g01683 653 SMART rrm1_1 209 281 IPR000504 GO:0003723
Bhi01g01683 653 SMART rrm1_1 30 103 IPR000504 GO:0003723
Bhi01g01683 653 SMART rrm1_1 312 384 IPR000504 GO:0003723
Bhi01g01683 653 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Bhi01g01683 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01179 Bhi-Chr1:23157354 Bhi01g01683 Bhi-Chr1:35356925 1.20E-06 dispersed
Bhi01g01683 Bhi-Chr1:35356925 Bhi04g01590 Bhi-Chr4:39998563 0 dispersed
Bhi01g03305 Bhi-Chr1:83096062 Bhi01g01683 Bhi-Chr1:35356925 4.98E-08 transposed
Bhi01g01683 Bhi-Chr1:35356925 Bhi05g01075 Bhi-Chr5:38774445 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01683 K13126 - csv:101219802 1189.48