Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bhi01g01683 | ATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCGTCAATCCTGCGGCGAACGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTTGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATTTTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGCGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCACCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATCAAGAATTTAGACAAGGCCATTGACCACAAAGCTCTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCTTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGAGTCTGCTCAGAAAGCAATTGAGAAGCTGAATGGCATGCTGTTGAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTTGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACCACTGAAGAGGATTTGAACAAAGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCCCTTAATGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAGTTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCTGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAACTGTTTGCTCCATTTGGCACAATCACCTCTTGCAAGGTCATGCGTGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATTGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATACGGCCAGTTCCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATATCCCCCTGGTGGTCCAGGTATTGGACAGCAGGTGTTTTTTGGTCAAGGTCCTCCTGCAATGATTCCTTCTCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGCCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAGCAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTACCCATGCCTGGTGTTGCTGGAGGCATGTTTTCCGTTCCATATGATATGGGAGGTATGGCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTGGCAAATGCTACACCAGACCAACAGAGAACAATGCTGGGAGAGAATCTTTACCCGCTAGTGGAACAGCTGGAGCCTGAAAATGCGGCCAAGGTGACTGGAATGCTTCTGGAGATGGATCAGACTGAGGTTTTGCATTTACTCGAGTCCCCAGAGGCTTTGAAGGCAAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCCGCAGCTCAGCAGCAACAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACTGAGAACCTCGTGTCGTGAGTTGCTTGTGTGTTCATAAAGCTCCCCTGATTCATGAAAAGAAACGTGTAGTAGTTGTGTGATACGATTGACTGGTTTGTTTATTTGTGGAGACTGCGGTACTGACATCATATTTGTTTGTACTGGTTTTTATCTCCTGAAGACTGCTGACATTTTCTTTTGTTTTTAGTTTTTGGTACTCTCTTTTTCCGTAGGATGAAGGCTTTTTGTTTTTGTTTTTTTTTGTTTTTTTTTTTTCTGTTTTAACATTAATCCGAGGTAGTGCTACTGTCTTCTGTTA | 2242 | 44.87 | MAAQVQAQPQNAISGVNPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALIEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVPMAASVAPRMPIYPPGGPGIGQQVFFGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMALRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS | 653 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35356925 | 35361898 | - | XM_039036097.1 | Bhi01g01683 | 24456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bhi01g01683 | 653 | SUPERFAMILY | PABC (PABP) domain | 495 | 645 | IPR036053 | GO:0003723 | |
Bhi01g01683 | 653 | Gene3D | - | 118 | 197 | IPR012677 | - | |
Bhi01g01683 | 653 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 210 | 278 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 313 | 381 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 119 | 187 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 101 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | Gene3D | - | 198 | 293 | IPR012677 | - | |
Bhi01g01683 | 653 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 392 | IPR035979 | GO:0003676 | |
Bhi01g01683 | 653 | MobiDBLite | consensus disorder prediction | 473 | 494 | - | - | |
Bhi01g01683 | 653 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676 | |
Bhi01g01683 | 653 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 189 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | CDD | RRM4_I_PABPs | 310 | 388 | - | - | |
Bhi01g01683 | 653 | Gene3D | - | 548 | 629 | - | - | |
Bhi01g01683 | 653 | CDD | RRM2_I_PABPs | 115 | 191 | IPR045305 | - | |
Bhi01g01683 | 653 | CDD | RRM1_I_PABPs | 30 | 109 | - | - | |
Bhi01g01683 | 653 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 552 | 629 | IPR002004 | GO:0003723 | |
Bhi01g01683 | 653 | Gene3D | - | 1 | 117 | IPR012677 | - | |
Bhi01g01683 | 653 | Gene3D | - | 294 | 396 | IPR012677 | - | |
Bhi01g01683 | 653 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 285 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | SMART | poly_2 | 564 | 627 | IPR002004 | GO:0003723 | |
Bhi01g01683 | 653 | Pfam | Poly-adenylate binding protein, unique domain | 560 | 624 | IPR002004 | GO:0003723 | |
Bhi01g01683 | 653 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 18 | 634 | - | - | |
Bhi01g01683 | 653 | PANTHER | RNA BINDING PROTEIN | 18 | 634 | - | - | |
Bhi01g01683 | 653 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | SMART | rrm2_1 | 312 | 384 | IPR003954 | GO:0003676 | |
Bhi01g01683 | 653 | SMART | rrm2_1 | 118 | 190 | IPR003954 | GO:0003676 | |
Bhi01g01683 | 653 | SMART | rrm2_1 | 209 | 281 | IPR003954 | GO:0003676 | |
Bhi01g01683 | 653 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676 | |
Bhi01g01683 | 653 | SMART | rrm1_1 | 118 | 190 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | SMART | rrm1_1 | 209 | 281 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | SMART | rrm1_1 | 312 | 384 | IPR000504 | GO:0003723 | |
Bhi01g01683 | 653 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 625 | IPR006515 | GO:0003723 | |
Bhi01g01683 | 653 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 388 | IPR000504 | GO:0003723 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bhi01g01179 | Bhi-Chr1:23157354 | Bhi01g01683 | Bhi-Chr1:35356925 | 1.20E-06 | dispersed | |
Bhi01g01683 | Bhi-Chr1:35356925 | Bhi04g01590 | Bhi-Chr4:39998563 | 0 | dispersed | |
Bhi01g03305 | Bhi-Chr1:83096062 | Bhi01g01683 | Bhi-Chr1:35356925 | 4.98E-08 | transposed | |
Bhi01g01683 | Bhi-Chr1:35356925 | Bhi05g01075 | Bhi-Chr5:38774445 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bhi01g01683 | K13126 | - | csv:101219802 | 1189.48 |