Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01902 ATGCCGGAAGAAACCATTCCGATCGACTACGTCATGGAAGCCGCCTCCGGACCTCACTTCTCTGGCCTCAGACTCGATGGACGTCTCTCTTCTCCGCCGTCTTCCTCAACTTCCTCTCCGGCTCACCGCTCTTCTCTTTCCTCTTCCTTTGGACAGGCCGATGCCAACTCTCCTAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACCGCTTCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGCGGGTTGACAGCTGAGGAACTAGAACGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTGTAGATTGCATTGAGAAGCTAAAGAGTGGCCAACCTTACCAGGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGTTTCCGACAGGTAAATGCATCTAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAGAGAGTCCGCAATCTGATGAATATGAAGATATTTGTTGACACAGATCCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACAGTAGAAAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCATCAAAGAAGTATGCCGATGTGATCATACCACGTGGGGGTGATAATCATGTTGCAATTGATTTGATTGTGCAACACATCCATACTAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACCGTCATTCAGTCAACATTTCAGATAAGAGGCATGCATACATTAATACGAGATCGGGACATTTCAAAGCATGATTTTGTATTCTATTCAGATCGACTGATTCGTCTGGTTGTGGAGCACGGCCTTGGCCATTTGCCGTTTACTGAAAAACAAGTGATCACTCCTACGGCATCTGTGTACACTGGGGTTGATTTCTGCAAAAAACTATGTGGAGTATCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGAAGCAGCTGATATATGAGAAATTACCCAGTGATATATCAGAGCGACATGTCCTGCTTCTAGATCCCGTTCTTGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTCATACAAAAGGGAGTTCCAGAAGCGCACATCATATTCCTCAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTGCAAACGCTTCCCATCCTTGAAAATTGTCACTTCTGAGATCGATGTTGGATTGGACGAAAATTATCGTGTCATACCCGGTCTGGGTGAATTTGGCGATCGTTACTTTGGTACCGACGATTAATTGTGCATTTAGCTGGTTGAAAAGAAGATAATATTATTAGCCCAGTGAATTAGATAAAAGCCATGAATCAACCATTGTGGAAGAAGATCAGCTGCAGATTTCCAGAGATTCAGCAGTAGTATTACTAAACCATAGATGAAGATTTCAACATTAAACTCAATTTATGTGGTATAATCATCGAATCATTGATGTCCACCTGTCCACCTGACACATTTCAAACTCAATTTGTGTGGTATAATCATCGAAAACTGTTATTTGTTGAATGATTATGTTTATGATAAGAAATTCAAATAAGTTGTTTTATAGTTCCAATCATGAAAGCAAAGATTGCAACCGAGTTGATGAAGTCAGAATGGCTCTCTCTCTCATATGCTGAATAAATTGAACAGTTTGCTGCCAAA 1850 42.22 MPEETIPIDYVMEAASGPHFSGLRLDGRLSSPPSSSTSSPAHRSSLSSSFGQADANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQPYQVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPSDISERHVLLLDPVLATGNSANQAIDLLIQKGVPEAHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVGLDENYRVIPGLGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 41685313 41696451 + XM_039024163.1 Bhi01g01902 24675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01902 482 CDD UMPK 63 261 IPR000764 -
Bhi01g01902 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Bhi01g01902 482 MobiDBLite consensus disorder prediction 28 56 - -
Bhi01g01902 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524|GO:0016301
Bhi01g01902 482 PRINTS Uridine kinase signature 61 78 - -
Bhi01g01902 482 PRINTS Uridine kinase signature 91 102 - -
Bhi01g01902 482 PRINTS Uridine kinase signature 136 151 - -
Bhi01g01902 482 PRINTS Uridine kinase signature 193 203 - -
Bhi01g01902 482 PRINTS Uridine kinase signature 207 218 - -
Bhi01g01902 482 PRINTS Uridine kinase signature 229 242 - -
Bhi01g01902 482 PANTHER URIDINE KINASE 16 479 - -
Bhi01g01902 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Bhi01g01902 482 PANTHER URIDINE KINASE-LIKE PROTEIN 2, CHLOROPLASTIC 16 479 IPR029930 GO:0004849|GO:0044206
Bhi01g01902 482 Gene3D - 57 264 IPR027417 -
Bhi01g01902 482 CDD PRTases_typeI 338 453 IPR000836 -
Bhi01g01902 482 MobiDBLite consensus disorder prediction 22 56 - -
Bhi01g01902 482 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381
Bhi01g01902 482 TIGRFAM udk: uridine kinase 60 261 IPR000764 -
Bhi01g01902 482 Gene3D - 265 480 IPR029057 -
Bhi01g01902 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01902 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101207261 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01902 Bhi-Chr1:41685313 Bhi09g01823 Bhi-Chr9:49410259 0 dispersed
Bhi07g00975 Bhi-Chr7:32269612 Bhi01g01902 Bhi-Chr1:41685313 3.86E-13 dispersed
Bhi12g00139 Bhi-Chr12:4142837 Bhi01g01902 Bhi-Chr1:41685313 3.07E-07 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00941 . 33 188 PRT Gene Family AT1G80050 79.5 3.9e-66 248.4
Bhi11g00216 . 30 180 PRT Gene Family AT1G80050 76.2 1.2e-62 236.9
Bhi12g00418 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-61 233.4
Bhi12g00417 . 30 183 PRT Gene Family AT1G80050 73.4 5.4e-60 228.0
Bhi04g00409 . 105 254 PRT Gene Family AT1G80050 72.0 5.6e-57 218.0
Bhi11g00215 . 30 148 PRT Gene Family AT1G80050 75.6 5.3e-47 184.9
Bhi04g00941 . 1 148 PRT Gene Family AT5G11160 80.4 5.5e-63 238.0
Bhi12g00418 . 8 145 PRT Gene Family AT5G11160 74.6 4.2e-55 211.8
Bhi04g00409 . 83 220 PRT Gene Family AT5G11160 72.5 1.4e-53 206.8
Bhi12g00417 . 8 148 PRT Gene Family AT5G11160 73.0 1.8e-53 206.5
Bhi11g00216 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi11g00215 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi04g00409 . 76 256 PRT Gene Family AT1G27450 82.3 2.4e-80 295.8
Bhi12g00418 . 7 180 PRT Gene Family AT1G27450 74.1 1.9e-72 269.6
Bhi11g00216 . 1 180 PRT Gene Family AT1G27450 72.2 1.6e-71 266.5
Bhi12g00417 . 7 183 PRT Gene Family AT1G27450 72.9 7.8e-71 264.2
Bhi04g00941 . 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.6
Bhi11g00215 . 1 146 PRT Gene Family AT1G27450 74.7 2.0e-58 223.0
Bhi10g01929 . 68 557 PRT Gene Family AT2G16570 84.8 5.8e-242 834.3
Bhi10g01929 . 64 557 PRT Gene Family AT4G34740 84.4 5.2e-243 837.8
Bhi10g01929 . 28 530 PRT Gene Family AT4G38880 70.8 8.9e-200 694.1
Bhi04g00409 . 76 256 PRT Gene Family AT1G27450 82.3 2.4e-80 295.8
Bhi12g00418 . 7 180 PRT Gene Family AT1G27450 74.1 1.9e-72 269.6
Bhi11g00216 . 1 180 PRT Gene Family AT1G27450 72.2 1.6e-71 266.5
Bhi12g00417 . 7 183 PRT Gene Family AT1G27450 72.9 7.8e-71 264.2
Bhi04g00941 . 11 183 PRT Gene Family AT1G27450 69.4 2.0e-66 249.6
Bhi11g00215 . 1 146 PRT Gene Family AT1G27450 74.7 2.0e-58 223.0
Bhi04g00941 . 33 188 PRT Gene Family AT1G80050 79.5 3.9e-66 248.4
Bhi11g00216 . 30 180 PRT Gene Family AT1G80050 76.2 1.2e-62 236.9
Bhi12g00418 . 30 180 PRT Gene Family AT1G80050 74.8 1.3e-61 233.4
Bhi12g00417 . 30 183 PRT Gene Family AT1G80050 73.4 5.4e-60 228.0
Bhi04g00409 . 105 254 PRT Gene Family AT1G80050 72.0 5.6e-57 218.0
Bhi11g00215 . 30 148 PRT Gene Family AT1G80050 75.6 5.3e-47 184.9
Bhi11g00216 . 5 97 PRT Gene Family AT4G22570 87.1 4.7e-44 174.5
Bhi11g00215 . 5 97 PRT Gene Family AT4G22570 87.1 4.7e-44 174.5
Bhi12g00418 . 6 104 PRT Gene Family AT4G22570 82.8 8.0e-44 173.7
Bhi12g00417 . 6 107 PRT Gene Family AT4G22570 80.4 3.4e-42 168.3
Bhi04g00409 . 80 172 PRT Gene Family AT4G22570 81.7 9.2e-40 160.2
Bhi04g00941 . 11 100 PRT Gene Family AT4G22570 78.9 3.3e-37 151.8
Bhi11g00216 . 1 96 PRT Gene Family AT4G12440 84.4 7.6e-41 163.7
Bhi11g00215 . 1 96 PRT Gene Family AT4G12440 84.4 7.6e-41 163.7
Bhi12g00418 . 1 96 PRT Gene Family AT4G12440 84.4 1.3e-40 162.9
Bhi12g00417 . 1 99 PRT Gene Family AT4G12440 81.8 5.4e-39 157.5
Bhi04g00409 . 76 171 PRT Gene Family AT4G12440 79.2 7.9e-38 153.7
Bhi04g00941 . 4 99 PRT Gene Family AT4G12440 78.1 5.1e-37 151.0
Bhi04g00941 . 1 148 PRT Gene Family AT5G11160 80.4 5.5e-63 238.0
Bhi12g00418 . 8 145 PRT Gene Family AT5G11160 74.6 4.2e-55 211.8
Bhi04g00409 . 83 220 PRT Gene Family AT5G11160 72.5 1.4e-53 206.8
Bhi12g00417 . 8 148 PRT Gene Family AT5G11160 73.0 1.8e-53 206.5
Bhi11g00216 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi11g00215 . 8 145 PRT Gene Family AT5G11160 71.7 5.7e-52 201.4
Bhi04g01588 . 1 186 PRT Gene Family AT1G71750 64.5 6.1e-69 258.1
Bhi09g01823 . 23 475 PRT Gene Family AT1G55810 85.5 4.0e-225 778.1
Bhi01g01902 . 19 482 PRT Gene Family AT1G55810 73.5 1.7e-199 693.0
Bhi09g01823 . 72 488 PRT Gene Family AT3G27440 74.9 1.6e-183 639.8
Bhi01g01902 . 80 482 PRT Gene Family AT3G27440 75.4 1.8e-179 626.3
Bhi01g01902 . 1 482 PRT Gene Family AT3G27190 86.1 3.9e-247 851.3
Bhi09g01823 . 11 474 PRT Gene Family AT3G27190 73.9 2.6e-206 715.7
Bhi03g02043 . 3 288 PRT Gene Family AT3G53900 67.7 6.4e-107 384.8
Bhi03g02042 . 3 293 PRT Gene Family AT3G53900 66.6 4.6e-105 378.6
Bhi03g02045 . 6 228 PRT Gene Family AT3G53900 77.6 1.3e-102 370.5
Bhi03g02044 . 6 233 PRT Gene Family AT3G53900 75.9 9.0e-101 364.4
Bhi09g01823 . 8 475 PRT Gene Family AT4G26510 83.9 1.9e-230 795.8
Bhi01g01902 . 11 482 PRT Gene Family AT4G26510 75.2 1.1e-209 726.9
Bhi01g01902 . 1 482 PRT Gene Family AT5G40870 86.7 2.3e-247 852.0
Bhi09g01823 . 10 477 PRT Gene Family AT5G40870 73.0 1.7e-205 713.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01902 Bhi_Chr01 FPKM 3.799624 3.066073 2.33947 1.463511 5.171809 6.456883 4.795488 0.807451 0.659618 0.402028