Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01915 CCCTTAAATATCCCTTTGTACTTCCTCTCTTTATATCCTCAATCAAATACCCTTTTTCCCCCAAATTTCTCTCTCATTTTATGCTTCCATTCTGCCATTGCTGTTCTTGCTCAAAATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAGAATTGCAGTATTCGACCTTGTTTACAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGACTCATGAATCTCATCAACGCTGGTCCTGATCATCTCCGCCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGACGGATTGTCAATCCGATTTACGGATCGGTTGGATTATTGTGGTCTGGTAGTTGGCAGCTCTGTCAGGCGGCTGTTGAAGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAAACGGCAGCTACTGCCGACGGACCGCCGTTGAAGGCTTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTTGCGTCCAACGATACCGAAGCCAATCGGCGAGTTAAGACTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAAGGGAAAGCGAGTAAAGGAATTGCCTCCACTGTTGATGAATCGACTCGGCGACTCTGCTCTACCGAGTTGAATAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGCATTATTTCAGTTGGAACAGCGGAGGATTCTCCTCCTCCGGTGCCGTCGGTTTTTTCCCGATCGGAATCCACGGGCCACGACGGCGGCGCAGTGCCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGTGTTACGTGCACAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTCGGGTTCAGGCCCAATAACGAGACGTGCAATACTGTTTTAGGCCTTGATTTTTCAGCCTGAAATAGAGGCCCAATAATGAGCCCACGCACACAACGACGGCAATAATAATAGTAATAATAAAAATAATAAGATAAAAAAGTAAGAATAAAAGAGAGTACAATTTTGACGGCGGGGATTGGCTATCTTCGGTGGCATAGAAGAGATCCGGACCATTCGTTTAGTTCGTTCCTTTGTTTTGACGTTTAGTTTTTATTGTAATTTACTGTTTTAACCCTGTCCCCTTTTGTAACTTGAAGCGATGTGTATATATTAAAAAAAAAAAAGTGGTCGCAATGTGTATAGGAAAGGAATATAATGTAAAAATGCAACAGGAGGCGAAAAGGTTCTTAGGTTTTTTTAAATCTCCATTTTCTTTATAAATTTTCTTAAAATATTTTAAGTTTGGTATCAAACAAGGGGCATGGCATGTTCCCTTCAGTTCA 1440 45.28 MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSETAATADGPPLKAYDIRHVSKDENSVASNDTEANRRVKTRCRFKRSAVKGKASKGIASTVDESTRRLCSTELNRSSSGESSLSHQSDSRHLENESKETESIISVGTAEDSPPPVPSVFSRSESTGHDGGAVPIPQSELALELTLGMEPVLRAQHVIPMKKRKIEADVGFRPNNETCNTVLGLDFSA 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 42161248 42162776 - XM_039043316.1 Bhi01g01915 24688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01915 300 MobiDBLite consensus disorder prediction 184 198 - -
Bhi01g01915 300 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Bhi01g01915 300 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Bhi01g01915 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 296 - -
Bhi01g01915 300 PIRSF AS2 1 296 IPR017414 -
Bhi01g01915 300 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 296 - -
Bhi01g01915 300 MobiDBLite consensus disorder prediction 184 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01915 - - - csv:101208245 523.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01915 Bhi-Chr1:42161248 Bhi07g01321 Bhi-Chr7:40406262 2.08E-65 dispersed
Bhi01g01915 Bhi-Chr1:42161248 Bhi01g03484 Bhi-Chr1:88094124 2.67E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g884 . . . . . . . . Cmo14g00825 . . Cma14g00811 . . . Cpe03g00701 . . . . . . . . . . . . . . . Cone11ag0317 . . . . . . . . . . . . . . . Sed05g2663 . . . . . . Cpe02g01431 . Bhi01g01915 Tan04g2009 Cmetu06g0556 Lac11g0176 Hepe02g0980 . . . . . . . . . . Csa03g02065 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g01185 . 16 233 AS2 family AT1G65620 66.4 1.0e-68 257.3
Bhi06g01184 . 1 218 AS2 family AT1G65620 66.4 1.0e-68 257.3
Bhi10g02237 . 2 110 AS2 family AT1G65620 81.7 1.7e-47 186.8
Bhi02g00500 CCT,ECH 3 179 AS2 family AT1G65620 52.7 1.2e-45 180.6
Bhi11g01604 CCT,ECH 18 128 AS2 family AT1G65620 70.3 3.4e-43 172.6
Bhi06g00552 . 1 117 AS2 family AT1G65620 69.2 1.7e-42 170.2
Bhi06g00551 CCT,ECH 1 117 AS2 family AT1G65620 69.2 1.7e-42 170.2
Bhi08g01650 CCT,ECH 13 119 AS2 family AT1G65620 72.0 1.0e-39 161.0
Bhi10g02237 . 1 127 AS2 family AT5G66870 83.2 7.6e-58 221.9
Bhi06g01185 . 19 127 AS2 family AT5G66870 77.1 1.8e-43 174.1
Bhi06g01184 . 4 112 AS2 family AT5G66870 77.1 1.8e-43 174.1
Bhi08g01650 CCT,ECH 13 130 AS2 family AT5G66870 65.3 2.1e-39 160.6
Bhi02g00500 CCT,ECH 1 113 AS2 family AT5G66870 68.1 3.6e-39 159.8
Bhi11g01604 CCT,ECH 22 128 AS2 family AT5G66870 68.2 4.6e-39 159.5
Bhi06g00552 . 1 121 AS2 family AT5G66870 62.8 1.0e-38 158.3
Bhi06g00551 CCT,ECH 1 121 AS2 family AT5G66870 62.8 1.0e-38 158.3
Bhi10g02237 . 4 141 AS2 family AT2G23660 63.0 1.6e-44 177.6
Bhi06g01185 . 21 127 AS2 family AT2G23660 69.2 1.6e-39 161.0
Bhi06g01184 . 6 112 AS2 family AT2G23660 69.2 1.6e-39 161.0
Bhi02g00500 CCT,ECH 8 113 AS2 family AT2G23660 64.2 3.0e-38 156.8
Bhi08g01650 CCT,ECH 13 129 AS2 family AT2G23660 63.0 6.7e-38 155.6
Bhi11g01604 CCT,ECH 22 138 AS2 family AT2G23660 58.1 3.3e-37 153.3
Bhi06g00552 . 4 127 AS2 family AT3G27650 80.2 3.4e-54 208.8
Bhi06g00551 CCT,ECH 4 127 AS2 family AT3G27650 80.2 3.4e-54 208.8
Bhi11g01604 CCT,ECH 19 129 AS2 family AT3G27650 84.7 3.2e-52 202.2
Bhi02g00500 CCT,ECH 4 114 AS2 family AT3G27650 78.4 3.1e-47 185.7
Bhi08g01650 CCT,ECH 13 118 AS2 family AT3G27650 73.6 3.9e-42 168.7
Bhi06g01185 . 18 127 AS2 family AT3G27650 68.2 1.5e-41 166.8
Bhi06g01184 . 3 112 AS2 family AT3G27650 68.2 1.5e-41 166.8
Bhi10g02237 . 4 112 AS2 family AT3G27650 67.9 4.8e-40 161.8
Bhi02g00500 CCT,ECH 3 129 AS2 family AT5G63090 83.2 5.0e-57 218.4
Bhi11g01604 CCT,ECH 17 140 AS2 family AT5G63090 78.2 8.3e-52 201.1
Bhi06g00552 . 1 113 AS2 family AT5G63090 86.0 1.6e-50 196.8
Bhi06g00551 CCT,ECH 1 113 AS2 family AT5G63090 86.0 1.6e-50 196.8
Bhi08g01650 CCT,ECH 7 117 AS2 family AT5G63090 78.4 9.5e-48 187.6
Bhi06g01185 . 18 137 AS2 family AT5G63090 70.0 3.7e-44 175.6
Bhi06g01184 . 3 122 AS2 family AT5G63090 70.0 3.7e-44 175.6
Bhi10g02237 . 2 110 AS2 family AT5G63090 70.6 1.9e-40 163.3
Bhi08g00916 . 14 125 AS2 family AT5G63090 64.3 5.2e-38 155.2
Bhi05g02025 CCT 21 147 AS2 family AT5G63090 58.3 2.0e-37 153.3
Bhi07g00520 . 4 106 AS2 family AT5G63090 69.9 2.6e-37 152.9
Bhi10g00963 CCT 14 117 AS2 family AT5G63090 67.3 2.6e-37 152.9
Bhi07g00520 . 3 114 AS2 family AT2G30130 91.1 9.2e-54 207.6
Bhi10g00845 . 4 134 AS2 family AT2G30130 70.7 2.6e-48 189.5
Bhi08g00916 . 10 129 AS2 family AT2G30130 68.3 1.3e-44 177.2
Bhi10g00963 CCT 10 125 AS2 family AT2G30130 72.4 1.3e-44 177.2
Bhi05g02025 CCT 17 127 AS2 family AT2G30130 72.1 8.6e-44 174.5
Bhi08g00414 . 8 122 AS2 family AT2G30130 71.8 3.3e-43 172.6
Bhi08g00274 . 37 141 AS2 family AT2G30130 67.6 7.1e-38 154.8
Bhi02g00500 CCT,ECH 8 111 AS2 family AT2G30130 68.3 2.1e-37 153.3
Bhi06g01185 . 22 124 AS2 family AT2G30130 67.0 1.7e-36 150.2
Bhi06g01184 . 7 109 AS2 family AT2G30130 67.0 1.7e-36 150.2
Bhi11g01604 CCT,ECH 23 126 AS2 family AT2G30130 65.4 1.7e-36 150.2
Bhi08g00916 . 4 170 AS2 family AT1G31320 74.6 3.2e-66 248.8
Bhi10g00963 CCT 1 171 AS2 family AT1G31320 72.3 2.6e-60 229.2
Bhi05g02025 CCT 10 132 AS2 family AT1G31320 71.5 2.5e-47 186.0
Bhi07g00520 . 2 122 AS2 family AT1G31320 68.3 4.5e-44 175.3
Bhi10g00845 . 6 114 AS2 family AT1G31320 67.0 2.6e-39 159.5
Bhi08g00274 . 37 146 AS2 family AT1G31320 67.3 1.3e-38 157.1
Bhi02g00500 CCT,ECH 9 120 AS2 family AT1G31320 62.5 1.2e-36 150.6
Bhi08g00274 . 34 202 AS2 family AT2G28500 57.9 2.4e-48 189.9
Bhi10g00583 . 31 195 AS2 family AT2G28500 55.4 1.9e-45 180.3
Bhi08g00311 . 15 131 AS2 family AT2G28500 70.1 7.2e-45 178.3
Bhi07g01035 . 54 146 AS2 family AT2G28500 88.2 1.9e-42 170.2
Bhi10g00845 . 6 114 AS2 family AT2G28500 64.2 5.5e-37 152.1
Bhi10g00963 CCT 13 122 AS2 family AT2G28500 66.4 7.2e-37 151.8
Bhi07g00520 . 5 113 AS2 family AT2G28500 66.1 1.6e-36 150.6
Bhi10g00583 . 4 195 AS2 family AT1G07900 62.4 1.1e-48 190.7
Bhi08g00274 . 21 202 AS2 family AT1G07900 53.6 1.3e-44 177.2
Bhi07g01035 . 54 209 AS2 family AT1G07900 68.9 3.8e-44 175.6
Bhi08g00311 . 15 179 AS2 family AT1G07900 55.4 1.0e-41 167.5
Bhi10g00963 CCT 6 171 AS2 family AT1G16530 56.5 2.1e-46 183.0
Bhi08g00916 . 4 170 AS2 family AT1G16530 53.6 1.4e-42 170.2
Bhi05g02025 CCT 17 161 AS2 family AT1G16530 54.4 2.2e-40 162.9
Bhi07g00520 . 5 110 AS2 family AT1G16530 67.3 8.7e-37 151.0
Bhi10g00845 . 6 111 AS2 family AT1G16530 67.3 8.7e-37 151.0
Bhi07g00472 . 1 157 AS2 family AT2G30340 65.2 1.1e-52 204.5
Bhi04g02264 . 12 152 AS2 family AT2G30340 69.7 3.1e-52 203.0
Bhi07g00472 . 32 157 AS2 family AT2G40470 81.7 1.9e-54 209.9
Bhi04g02264 . 32 173 AS2 family AT2G40470 73.9 3.3e-54 209.1
Bhi10g00963 CCT 11 122 AS2 family AT2G40470 65.2 2.7e-40 162.9
Bhi05g02025 CCT 22 133 AS2 family AT2G40470 63.4 3.3e-38 156.0
Bhi08g00916 . 15 125 AS2 family AT2G40470 63.1 1.6e-37 153.7
Bhi04g02291 . 1 170 AS2 family AT3G11090 61.6 1.7e-48 189.9
Bhi05g00242 . 26 138 AS2 family AT2G42440 74.3 6.4e-44 175.3
Bhi09g01233 . 6 139 AS2 family AT2G42440 61.9 1.7e-41 167.2
Bhi05g00243 . 24 132 AS2 family AT2G42440 70.6 1.2e-39 161.0
Bhi09g01233 . 1 125 AS2 family AT3G58190 74.0 1.3e-48 190.7
Bhi05g00242 . 29 140 AS2 family AT3G58190 79.5 1.2e-46 184.1
Bhi05g00243 . 24 132 AS2 family AT3G58190 71.6 4.1e-42 169.1
Bhi05g00244 . 24 113 AS2 family AT3G58190 78.9 4.2e-39 159.1
Bhi05g00242 . 26 200 AS2 family AT2G31310 51.6 7.3e-40 161.4
Bhi05g00244 . 24 111 AS2 family AT2G31310 72.7 1.7e-36 150.2
Bhi05g00243 . 24 111 AS2 family AT2G31310 72.7 1.7e-36 150.2
Bhi05g00243 . 24 241 AS2 family AT2G42430 54.3 4.7e-55 212.2
Bhi05g00244 . 24 127 AS2 family AT2G42430 83.7 3.4e-45 179.5
Bhi05g00242 . 25 119 AS2 family AT2G42430 78.9 4.7e-39 159.1
Bhi01g00269 . 16 126 AS2 family AT2G42430 63.1 5.8e-37 152.1
Bhi09g01233 . 11 113 AS2 family AT2G42430 68.9 1.3e-36 151.0
Bhi01g00269 . 24 187 AS2 family AT4G00220 53.9 1.5e-42 170.6
Bhi12g02627 . 25 208 AS2 family AT4G00220 50.8 1.1e-37 154.5
Bhi01g00269 . 24 180 AS2 family AT2G45420 59.4 1.1e-49 194.5
Bhi05g00243 . 26 128 AS2 family AT2G45420 77.7 6.4e-42 168.7
Bhi09g01233 . 11 117 AS2 family AT2G45420 70.1 2.1e-40 163.7
Bhi05g00244 . 26 113 AS2 family AT2G45420 85.2 1.7e-39 160.6
Bhi11g02885 . 37 126 AS2 family AT2G45420 80.0 1.2e-37 154.5
Bhi06g00975 . 17 119 AS2 family AT2G45420 67.0 1.1e-36 151.4
Bhi05g00242 . 32 120 AS2 family AT2G45420 76.4 1.8e-36 150.6
Bhi11g02885 . 28 150 AS2 family AT3G03760 76.4 6.4e-45 178.7
Bhi05g00243 . 25 127 AS2 family AT3G03760 74.8 1.0e-37 154.8
Bhi09g01233 . 11 111 AS2 family AT3G03760 70.3 1.9e-36 150.6
Bhi01g00269 . 16 133 AS2 family AT4G00210 63.9 3.5e-41 166.0
Bhi09g01233 . 1 115 AS2 family AT4G00210 62.6 2.1e-38 156.8
Bhi05g00243 . 24 128 AS2 family AT4G00210 65.7 1.5e-36 150.6
Bhi01g00269 . 11 127 AS2 family AT2G45410 64.1 2.3e-41 166.4
Bhi05g00243 . 26 128 AS2 family AT2G45410 67.0 2.7e-37 152.9
Bhi06g00975 . 16 121 AS2 family AT5G06080 76.4 2.3e-43 172.9
Bhi09g00376 . 31 138 AS2 family AT3G13850 75.9 1.0e-42 171.4
Bhi01g01915 . 1 162 AS2 family AT1G68510 65.3 8.7e-59 224.6
Bhi01g03484 . 1 237 AS2 family AT1G68510 50.8 1.0e-54 211.1
Bhi07g01321 . 1 136 AS2 family AT1G68510 65.5 6.3e-49 191.8
Bhi03g01024 . 1 104 AS2 family AT1G68510 64.4 1.2e-39 161.0
Bhi09g03239 . 1 121 AS2 family AT1G68510 58.5 4.2e-37 152.5
Bhi01g03484 . 1 134 AS2 family AT1G67100 75.7 6.1e-60 228.4
Bhi07g01321 . 1 132 AS2 family AT1G67100 67.1 1.5e-50 197.2
Bhi03g01024 . 1 110 AS2 family AT1G67100 67.3 2.7e-44 176.4
Bhi09g03239 . 1 110 AS2 family AT1G67100 62.7 1.3e-38 157.5
Bhi01g01915 . 1 296 AS2 family AT3G02550 56.0 1.8e-76 283.5
Bhi01g03484 . 1 166 AS2 family AT3G02550 67.1 7.3e-62 235.0
Bhi07g01321 . 1 141 AS2 family AT3G02550 62.2 1.1e-46 184.5
Bhi03g01024 . 1 136 AS2 family AT3G02550 54.4 6.0e-40 162.2
Bhi03g01024 . 1 234 AS2 family AT5G67420 59.7 8.2e-71 264.6
Bhi09g03239 . 1 111 AS2 family AT5G67420 73.0 9.1e-46 181.4
Bhi01g01915 . 3 112 AS2 family AT5G67420 68.2 1.7e-44 177.2
Bhi01g03484 . 3 112 AS2 family AT5G67420 61.8 7.5e-40 161.8
Bhi07g01321 . 3 120 AS2 family AT5G67420 59.7 9.8e-40 161.4
Bhi03g01024 . 1 233 AS2 family AT3G49940 59.4 1.4e-70 263.8
Bhi01g01915 . 3 157 AS2 family AT3G49940 52.9 5.8e-45 178.7
Bhi01g03484 . 3 112 AS2 family AT3G49940 62.7 5.7e-40 162.2
Bhi07g01321 . 3 120 AS2 family AT3G49940 61.0 2.4e-38 156.8
Bhi03g01024 . 1 234 AS2 family AT4G37540 57.3 1.4e-67 253.8
Bhi09g03239 . 1 203 AS2 family AT4G37540 50.4 3.1e-51 199.5
Bhi01g01915 . 3 160 AS2 family AT4G37540 53.2 4.5e-42 169.1
Bhi01g03484 . 3 113 AS2 family AT4G37540 63.1 9.4e-40 161.4
Bhi07g01321 . 3 107 AS2 family AT4G37540 64.8 8.8e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007819 2 1 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
177 PF03195 LOB 1.80E-24 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01915 Bhi_Chr01 FPKM 1.071651 0.22832 0.684649 0.815329 0.417442 0.0 0.0 0.253496 0.0 0.35337