Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g01936 AAAGAGGGACACAAATTATAATTGAACCGTGGGAAAAAGTACAAATTTGCAAAAGCAAGTCCGAAAGTTTGCATTATTTAATTTCGCTTCCCCCACTCCCGAAAAAAGAGAGAAAAGAAAGGTATTACTATTATTATTATAGCCTTGCAGTGGTTCCTTATCTCTTCCGCTCGTGGCCTCCCTCTGTCCATCACTTTCATTGAAGCTGCCGCCTCTCTCTTCCCCCGTTCCCATCTCTTCCAACTTACACATTCAAAAATGTATCCATAGTTTCAAAATCAATCCACCATTAAACTCCAGTTTCACCACTATGATCCATCTCCACACTCAAAAAACCTCTGAAATTCTATACCCATGAAGCGAGACCACACTCACCAATCCTCAAATCCCGCCGCCGCAGCCTCCGGCAACCCCAAGACATGGCCGGTCAAGGAGGAGGAAGACGACGACAAAGATCTAGCTGCTCTTGGCTACAATGTCCGGTCGTCGGACATGGCCGACGTTGCTCTGAAACTGGAACAGCTAGAAATGGTAATGGGTTTGTCGGAAGAAGATGGAATTTCTCACCTCTCTTCCAATACAGTCCATTACAATCCTTCTGATGTTTCTTCTTGGGTTCAAAGCATGCTCGCTGAACTCAATACTCCGCTTCAATCCCAAGGAATGATCCATGACCCTGTTCTCGCCATAGCTGAATCCAGTTCCTCCTCCGTCCTCGCCGCCTTCACCGACGATTCCGAGTACGATCTTAGGGCCATTCCGGGCTTTGCTGCTTTCCCACAACTCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCAGATTCCGAATCCCTTCCTGCATCTGCATCTTCTTCTTCTTCGTCGTCCTCGTCGGAGCCGTCGCGCTCGGTGGTTCTGGTGGATTCCGCCGAGACTGGCGTCCGTCTGGTCCATAGTCTTCTCGCCTGCGCCGATGCCGTCGACACAAACAATCTCAACCTTGCTGAGGCTCTACTAAAACACATCAGAATCCTCGTTGAAGCTCAGGCCGGCGCGATGAGAAAAGTCGCTGGCTATTTCGCTCAAGCTCTCACTCACCGGATTTACAGATTCTACCCACAGAAGCCCTTCAATTATTCATCTTCATACACCGATCTTCTCCTCATGCATTTCTATGAATCTTGCCCCTATCTGAAATTCGCCCATTTCACTGCCAATCAAGCTATTCTCGAATCCGTTGGTTCTGCTGGTACCGTCCACGTCATCGATTTCAACCTCCAGCAAGGCCACCAATGGCCGCCGTTGATTCAGGCCTTCGCACTCCGACCAGGTGGGCCTCCGGCGTTTCATCTTACTGGAATCCGTCCCCCACCGGAGGAAAATTCCTCTGACGGATTACATGAAGTGGGCTCGAAATTGGCGCAATTCGCGGATAAATTCGGCGTGAAATTCGAATTCCGTGGATTTTTCTGCAACAATTTGGCCGATCTCGAACCGTCAATGCTCAATTTAGAAACAGAAACCGTCGCTATAAACTCCATTTTCGAGCTCCACCGGCTACTGGCCAATCCGGGCGCAATTGAAAAAGTTCTAACAACAATCAAAGAACTGAACCCCAAAGTCGTCAGCGTCGTGGAGCAGGTCGCCGATCACAACGGGCCATCGTTCGTAGACCGATTCACAGAAGCACTACACTATTATTCAAGCTTATTCGATTCGTTAGAAGGGTCGCCGGCAGGGGAGGAGGATGTGCTGAGGTCAGAGGAATATTTAGGGAGGCAAATCTGCAACGTAGTGGCGTGTGAAGCTTCCGACCGGGTCGAGCGACATGAGACGGTGGCGCAGTGGCGGAACCGGTTGGGCTCAAGTGGGTTCGAGATGGTTCATCTGGGTTCGAACGCGTTCAAGCAGGCGAGTACTTTGCTGGCGGCTCTGTTCGGCGGTGGAAATGGGTACAGAGTCGAAGAGAATAATGGGAGTTTGACTTTGGGATGGCACACTCGGCCGCTCATCGCCACGTCGGCCTGGACGCTGGCCGGAGGCGGTCGGAATGCCTAGTCGGCTCGGCCGAGTTGAGGGCGGATCTGAACCCTTTGAAATATAGAGAGGGAAATAGAAGGAAAGTGGTGGTTTTGTGTAATTCTTCTTTGTTTAGTTGTTTTATTACTCTCTTCCTTTTTATTTTGTATTTTACTGTTTTGCCCCCCTTTTTATTTTTGAAAATATGGTAGAGAAGCTGAGGAAGAGAAGGGGTTTTTCTTTTA 2246 49.29 MKRDHTHQSSNPAAAASGNPKTWPVKEEEDDDKDLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTPLQSQGMIHDPVLAIAESSSSSVLAAFTDDSEYDLRAIPGFAAFPQLDSTNPRKRFKKSDSESLPASASSSSSSSSSEPSRSVVLVDSAETGVRLVHSLLACADAVDTNNLNLAEALLKHIRILVEAQAGAMRKVAGYFAQALTHRIYRFYPQKPFNYSSSYTDLLLMHFYESCPYLKFAHFTANQAILESVGSAGTVHVIDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGIRPPPEENSSDGLHEVGSKLAQFADKFGVKFEFRGFFCNNLADLEPSMLNLETETVAINSIFELHRLLANPGAIEKVLTTIKELNPKVVSVVEQVADHNGPSFVDRFTEALHYYSSLFDSLEGSPAGEEDVLRSEEYLGRQICNVVACEASDRVERHETVAQWRNRLGSSGFEMVHLGSNAFKQASTLLAALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWTLAGGGRNA 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 43009690 43011935 - XM_039047022.1 Bhi01g01936 24709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g01936 561 Gene3D - 31 95 IPR038088 -
Bhi01g01936 561 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 28 552 IPR005202 -
Bhi01g01936 561 MobiDBLite consensus disorder prediction 159 178 - -
Bhi01g01936 561 MobiDBLite consensus disorder prediction 149 178 - -
Bhi01g01936 561 MobiDBLite consensus disorder prediction 1 31 - -
Bhi01g01936 561 Pfam GRAS domain family 192 553 IPR005202 -
Bhi01g01936 561 Pfam Transcriptional regulator DELLA protein N terminal 32 98 IPR021914 -
Bhi01g01936 561 SMART DELLA_2 33 105 - -
Bhi01g01936 561 PANTHER DELLA PROTEIN RGL1 28 552 IPR030006 GO:0003712|GO:0005634
Bhi01g01936 561 ProSiteProfiles GRAS family profile. 183 553 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g01936 K14494 DELLA; DELLA protein - csv:101203095 966.837
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01936 Bhi-Chr1:43009690 Bhi12g01253 Bhi-Chr12:37250717 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g02267 . 74 753 GRAS Transcription Factor Family AT2G37650 54.5 6.5e-198 688.3
Bhi11g02266 . 74 753 GRAS Transcription Factor Family AT2G37650 54.5 6.5e-198 688.3
Bhi08g00587 . 317 699 GRAS Transcription Factor Family AT3G46600 56.7 2.1e-127 453.8
Bhi11g02267 . 295 753 GRAS Transcription Factor Family AT3G46600 50.1 2.9e-121 433.3
Bhi11g02266 . 295 753 GRAS Transcription Factor Family AT3G46600 50.1 2.9e-121 433.3
Bhi03g01023 . 49 468 GRAS Transcription Factor Family AT3G49950 60.5 1.1e-136 484.2
Bhi11g00199 . 419 791 GRAS Transcription Factor Family AT3G60630 50.6 1.6e-91 334.7
Bhi01g03046 . 54 450 GRAS Transcription Factor Family AT5G41920 67.9 2.1e-148 523.1
Bhi03g02273 . 447 839 GRAS Transcription Factor Family AT5G41920 55.5 5.1e-115 412.1
Bhi03g01287 . 1 608 GRAS Transcription Factor Family AT5G66770 58.1 1.2e-176 617.5
Bhi03g01286 . 1 608 GRAS Transcription Factor Family AT5G66770 58.1 1.2e-176 617.5
Bhi01g02434 . 1 584 GRAS Transcription Factor Family AT5G66770 56.6 3.5e-173 605.9
Bhi10g01328 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01326 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01327 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01324 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01325 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01323 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01322 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi10g01329 . 57 545 GRAS Transcription Factor Family AT1G50600 59.0 1.5e-162 570.5
Bhi11g00497 . 45 543 GRAS Transcription Factor Family AT1G50600 58.5 3.6e-161 565.8
Bhi03g00665 . 109 546 GRAS Transcription Factor Family AT1G50600 57.4 8.9e-144 508.1
Bhi09g01957 . 221 591 GRAS Transcription Factor Family AT1G50600 61.5 5.4e-133 472.2
Bhi11g00394 . 1 639 GRAS Transcription Factor Family AT1G63100 50.3 3.8e-160 562.8
Bhi12g00914 . 44 582 GRAS Transcription Factor Family AT1G14920 68.3 1.4e-208 723.4
Bhi12g01253 . 46 596 GRAS Transcription Factor Family AT1G14920 60.5 2.4e-181 632.9
Bhi01g01936 . 32 555 GRAS Transcription Factor Family AT1G14920 56.3 3.8e-158 555.8
Bhi11g00376 . 36 407 GRAS Transcription Factor Family AT1G55580 50.6 3.8e-103 372.9
Bhi12g01253 . 1 593 GRAS Transcription Factor Family AT1G66350 58.5 2.2e-179 626.3
Bhi12g00914 . 1 580 GRAS Transcription Factor Family AT1G66350 57.4 1.6e-174 610.1
Bhi01g01936 . 1 554 GRAS Transcription Factor Family AT1G66350 55.7 3.0e-160 562.8
Bhi10g00730 . 198 722 GRAS Transcription Factor Family AT1G07520 50.2 7.9e-140 495.0
Bhi10g01328 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01326 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01327 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01324 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01325 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01323 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01322 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi10g01329 . 19 545 GRAS Transcription Factor Family AT5G48150 65.3 1.7e-192 669.8
Bhi11g00497 . 17 543 GRAS Transcription Factor Family AT5G48150 58.2 1.6e-171 600.1
Bhi03g00665 . 14 546 GRAS Transcription Factor Family AT5G48150 52.1 2.9e-152 536.2
Bhi09g01957 . 221 591 GRAS Transcription Factor Family AT5G48150 62.9 6.4e-136 481.9
Bhi12g00914 . 46 579 GRAS Transcription Factor Family AT2G01570 68.8 2.2e-212 736.1
Bhi12g01253 . 48 594 GRAS Transcription Factor Family AT2G01570 62.1 2.0e-184 643.3
Bhi01g01936 . 31 555 GRAS Transcription Factor Family AT2G01570 58.5 1.6e-162 570.5
Bhi12g01253 . 1 593 GRAS Transcription Factor Family AT1G66350 58.5 2.2e-179 626.3
Bhi12g00914 . 1 580 GRAS Transcription Factor Family AT1G66350 57.4 1.6e-174 610.1
Bhi01g01936 . 1 554 GRAS Transcription Factor Family AT1G66350 55.7 3.0e-160 562.8
Bhi12g01253 . 48 594 GRAS Transcription Factor Family AT3G03450 61.2 1.7e-177 620.2
Bhi12g00914 . 46 579 GRAS Transcription Factor Family AT3G03450 60.6 8.1e-172 601.3
Bhi01g01936 . 31 555 GRAS Transcription Factor Family AT3G03450 57.8 4.7e-156 548.9
Bhi12g01253 . 42 596 GRAS Transcription Factor Family AT5G17490 56.0 1.1e-157 554.3
Bhi12g00914 . 42 579 GRAS Transcription Factor Family AT5G17490 56.9 7.7e-156 548.1
Bhi01g01936 . 28 555 GRAS Transcription Factor Family AT5G17490 53.1 7.3e-138 488.4
Bhi09g01484 . 1 570 GRAS Transcription Factor Family AT1G21450 57.0 1.9e-171 600.1
Bhi09g01483 . 1 570 GRAS Transcription Factor Family AT1G21450 57.0 1.9e-171 600.1
Bhi09g01482 . 1 570 GRAS Transcription Factor Family AT1G21450 57.0 1.9e-171 600.1
Bhi11g00497 . 167 543 GRAS Transcription Factor Family AT1G21450 52.4 8.3e-114 408.7
Bhi08g00587 . 325 699 GRAS Transcription Factor Family AT5G59450 57.3 9.4e-129 458.4
Bhi11g02267 . 304 753 GRAS Transcription Factor Family AT5G59450 50.3 6.5e-122 435.6
Bhi11g02266 . 304 753 GRAS Transcription Factor Family AT5G59450 50.3 6.5e-122 435.6
Bhi03g00665 . 36 546 GRAS Transcription Factor Family AT4G17230 61.7 1.4e-176 617.1
Bhi11g00497 . 49 543 GRAS Transcription Factor Family AT4G17230 52.1 1.6e-137 487.3
Bhi09g01957 . 218 591 GRAS Transcription Factor Family AT4G17230 52.7 5.3e-112 402.5
Bhi10g01328 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01326 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01327 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01324 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01325 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01323 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01322 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi10g01329 . 136 545 GRAS Transcription Factor Family AT2G04890 66.4 4.1e-160 562.0
Bhi11g00497 . 147 543 GRAS Transcription Factor Family AT2G04890 59.4 4.5e-143 505.4
Bhi09g01957 . 221 591 GRAS Transcription Factor Family AT2G04890 59.8 4.1e-128 455.7
Bhi03g00665 . 139 546 GRAS Transcription Factor Family AT2G04890 56.4 2.3e-126 449.9
Bhi02g01502 . 1 471 GRAS Transcription Factor Family AT1G50420 66.7 1.6e-176 616.7
Bhi07g00891 . 12 473 GRAS Transcription Factor Family AT1G50420 61.1 8.4e-157 551.2
Bhi07g00888 . 12 473 GRAS Transcription Factor Family AT1G50420 61.1 8.4e-157 551.2
Bhi07g00890 . 1 462 GRAS Transcription Factor Family AT1G50420 61.1 8.4e-157 551.2
Bhi07g00889 . 6 459 GRAS Transcription Factor Family AT1G50420 61.7 2.5e-156 549.7
Bhi11g00199 . 428 791 GRAS Transcription Factor Family AT4G00150 55.0 8.1e-103 372.1
Bhi01g02434 . 1 584 GRAS Transcription Factor Family AT3G50650 51.8 7.8e-151 531.6
Bhi03g02273 . 182 837 GRAS Transcription Factor Family AT3G54220 60.4 3.9e-205 712.2
Bhi01g03046 . 83 448 GRAS Transcription Factor Family AT3G54220 63.9 3.6e-134 476.5
Bhi03g01039 . 106 492 GRAS Transcription Factor Family AT4G37650 67.9 1.7e-155 547.0
Bhi10g02098 . 97 485 GRAS Transcription Factor Family AT4G37650 56.5 3.8e-126 449.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000304 5 4 4 7 5 4 8 4 4 4 4 4 8 4 3 7 4 8 8 4 4 3 4 4 4 4 4 4 4 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
183 PF03514 GRAS 2.00E-122 CL0063 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi01g01936 Bhi_Chr01 FPKM 6.256587 4.393528 15.826715 14.899096 35.323738 32.371899 33.379208 12.483456 14.606395 14.15337