Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02096 TTCTCTCTCTTCAATTTAGAGAAAGAGATGAGAAAACAAAACTACTCCCTTGAGGGCTCAAAATTCATTTGGGTTTGTTTCTTTTGTTTACTCTTTAATCAAAGAGGGAATAGGGAAATGAAAAAATGCTTTGGGTCTTGGGATTTCATATTCCTAATTCCTTAAGCTTTCCATCAATTTTTCCATCTTCTAGTACTAGTACTACACACCCAAACCAGTGTCCTGTCTCTCTTATAACATCCAATCATTCTCTATCCTTGACTGTATTTTCTTTTTTGTTTTGTTTTTGTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTAAATTTAATTTAAAAGGTGAAAAGACCCATTTGAAGACTTGGGCATGTTCAATTGGAGAGAAAAAGAAGAAGAAGAATCAGAAGAAGAAGCCACAAATCCAGCAAGTCTTGTTTATGGATTGGGGTTGGGGAAAATTTTCTGGGGAACCCATTTTCCCAGAAAACAAACAGAACCCACCCTCAAGTTTCTCTGACTCGATTGGCTCCAACAAGGGTTCGAGCCAAGAAAGTTCTTCCTCTCATGGATCCTCTAAAAGGATTCGTTTACTCCATGGAAGCCAAAACCAGACGTGTTTGGTTGATGGTTGTGACACTGACCTCACCAATTGCAAGGATTATCATCGACGCCATAGGGTCTGCGATTCCCACTCCAAAACCCCTGTTGTGTTGGTAAGAGGAGAGGAGAAGCGATTCTGTCAACAGTGTAGCAGATTCCATTCGCTTGGTGAGTTTGATGAGGTGAAGAGGAGCTGTAGGAAGCGGCTTGATGGGCATAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCATTGTTTATGAGTTCAACGGATTTTCTGTCAAATTGTAAAGGTCCAATTGTGCTGCAGTTCAGTGATCAACAGATTCATCATGTGCCTGATGAACTTGGTAGGAGTTTATGGCCTGTAAGAACTGAAGGTGAAGAGAAATCTTCAATGGTTCCACCAAATTCCTCTGCTTACTTCAGTTATGGAAGAGGAGACAACAAACAGTTGCCTTTTTTCCTGCACAAAAATGGCACAAGGCAAGGCAAGCAAATGGTTTCTTCTCAGTTGTCTTTCAATCAGCAACTTCCTGATGTAATCTCTCAGGGGAGTGAGATGGGCAACCAGAAACCAGTGCCCACTGATACTTCACTCGAGGATTCAGGTTGTGCTCTCTATCTTCTGTCATCGCACCAGGTGCAAGCTCATCCAGATGCTGGCTTGAGCACTTTGGTTCAGTCCCATCTGAGTGTTCCAATCCAAACTCACGAGACTGAGCTGGATTTCAGCAGTCCAAGTGATTTCTCTGGCTCCTTTGGCTCCAAGGACAAGCCTGTTTGCAAAACTAACCTTCATAGTGAGTCAGTTCTTGAAATGGAGGAAGAATCTGATGGCTTGTTCCGAAGGGAGGCTCCACACAAGTTTCCCATTTATTGGGAGTAGTTTGCTTCAGTGAACTTGTTTGTTTTTTTGTGGCTTTAGTCAAAGACTTCTTTTGAATTTGAACATCTGTGTTCTGTGATTGTAGACAGCGAATGTATTTTGCTGGTTTATTTTGAGTTTCCATAACTGCTTTGACATTATCATTTACACTAGGAGTCTCTCCGCATTGTTAGCACGTTACAATATCTTCGTGCCATTTTGGTAACAAACGGCGAGGGATCCTGGTGATGATTGTTTTTCTGTTTGGCTTCTAGACTTGTTTCTTGGATCATGTTTTCTTTGCAAGTTCCTGTGTTCTTACACATCCTTGATCA 1798 41.27 MLWVLGFHIPNSLSFPSIFPSSSTSTTHPNQCPVSLITSNHSLSLTVFSFLFCFCFCFLFFVFFFKFNLKGEKTHLKTWACSIGEKKKKKNQKKKPQIQQVLFMDWGWGKFSGEPIFPENKQNPPSSFSDSIGSNKGSSQESSSSHGSSKRIRLLHGSQNQTCLVDGCDTDLTNCKDYHRRHRVCDSHSKTPVVLVRGEEKRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSTDFLSNCKGPIVLQFSDQQIHHVPDELGRSLWPVRTEGEEKSSMVPPNSSAYFSYGRGDNKQLPFFLHKNGTRQGKQMVSSQLSFNQQLPDVISQGSEMGNQKPVPTDTSLEDSGCALYLLSSHQVQAHPDAGLSTLVQSHLSVPIQTHETELDFSSPSDFSGSFGSKDKPVCKTNLHSESVLEMEEESDGLFRREAPHKFPIYWE 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48098152 48100198 - XM_039022016.1 Bhi01g02096 24869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02096 452 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 136 452 - -
Bhi01g02096 452 Pfam SBP domain 163 236 IPR004333 GO:0003677
Bhi01g02096 452 ProSiteProfiles Zinc finger SBP-type profile. 160 237 IPR004333 GO:0003677
Bhi01g02096 452 SUPERFAMILY SBT domain 162 242 IPR036893 GO:0003677|GO:0005634
Bhi01g02096 452 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 136 452 IPR044817 GO:0003677
Bhi01g02096 452 Gene3D - 155 224 IPR036893 GO:0003677|GO:0005634
Bhi01g02096 452 MobiDBLite consensus disorder prediction 122 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02096 - - - bhj:120070162 818.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02096 Bhi-Chr1:48098152 Bhi08g01507 Bhi-Chr8:43476394 1.15E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1148 . . . . . . . . Cmo14g00739 Cmo11g01608 Cma11g01513 Cma14g00725 Car11g01303 Car14g00662 . Cpe03g00630 . . . . . . . . . . . . . . . Cone11ag0042 Cone18ag1438 . . . . Chy06g01539 Cme06g01786 . . Bda07g01385 . Bpe09g00547 Bpe11g01487 . . . . . . . . . . . Bhi01g02096 . . . Hepe02g1698 . . Cla05g01423 Cam05g1511 Cec05g1523 Cco05g1559 Clacu05g1518 Cmu05g1426 Cre05g1528 . Csa03g02486 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01308 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01309 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01310 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01308 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01309 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01310 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50570 64.4 2.5e-36 150.6
Bhi09g02766 . 1 1063 SBP-box Gene Family AT1G20980 50.1 1.1e-265 914.1
Bhi09g02766 . 1 725 SBP-box Gene Family AT1G76580 50.2 2.5e-170 596.7
Bhi11g01308 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01309 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01310 . 180 1014 SBP-box Gene Family AT2G47070 55.2 6.2e-239 824.7
Bhi11g01308 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01309 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi11g01310 . 25 1014 SBP-box Gene Family AT3G60030 54.3 8.3e-278 954.1
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50570 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50570 64.4 2.5e-36 150.6
Bhi12g02448 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi12g02449 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi12g02447 . 15 163 SBP-box Gene Family AT5G50670 55.3 2.8e-40 163.7
Bhi01g02096 . 159 262 SBP-box Gene Family AT5G50670 64.4 2.5e-36 150.6
Bhi09g02766 . 1 1063 SBP-box Gene Family AT1G20980 50.1 1.1e-265 914.1
Bhi09g02766 . 1 725 SBP-box Gene Family AT1G76580 50.2 2.5e-170 596.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006434 2 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 3 1 1 2 1 0 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
196 PF03110 SBP 5.80E-30 No_clan Bhi TF