Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02112 TTCCTTGCCAAAAACAGTGAAAACCCATGAAAGTTTTGGACTTTTCAGCTCAACTTCTTCAATCAAGCACAACCCAACACAACCCTTTTTTTTTTTTGACAATTTATTTTTGAAAAAAACTTTTTTTTAAAAGAAAATTTATTCTTTTTTTGCCCTTCTCCTTCTTCTTCTTCTATGGATCCTAAAACCTCATCAACAACAAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCTCCAGAAGAAGAAGAATTAATCATGGGTGAAAACAAACCAGCTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAAGGGAAAAAACAGTTAGCCCCAAAAAGAAGCTCAAACAAAGACCGTCACACCAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCGGCTAGGATTTTTCAGTTGACCAGAGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGTTGCAGCAGGCGGAGCCGTCGATAATCGCAGCCACAGGAACCGGAACCATTCCGGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGTTTCTCTGTCGGCCGGATTGCATCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGTCAATTGGGCGAATTTGGGGAGACCCCATTTGGCCGCTACACCCACAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGATTTCAGCCTTCAACTGCTGCTTCTGCTGCTGCTGTTGCTGTTGCTGCTCAATCAGCTACTAATTTAGCTAATGAAACTTCAAATTACTTTCACAAACTTGGGTTCCCACCTTTTGACTGTTCCCCAACCAACATGGGTCCTATGAGTTTCACCTCCATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTATAAATCCTCAGGCACTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCATCATCAGCATCATCATCATCATCAACACCATCACCACCAGCAACCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAGAAAATGGAAGAATAAGGATTTTTTTTTTCTTTGAGAGAGGATGGCAAATGGCTATAAGGGTTTTTTCTATCTTTTTTTTTTTTTCTCCTTTTGGTTTTTCCTTTTTCTTAATGGGTTTTTGTATTGTATTGTATAATTTCAAAGTGAGAACAAAAAGAAAAGAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGATACCTACCTGAGAGGAAATTCTATAGTGATCTTTATTTGGTTTGCACCCTCCTTGTGATTGCAATCTTTCAAACTCTTCTTCACATCCCAGGTGTGATTGTATACAACTGAAAGCAGCTTGGCTTGAGCTTAACTACATTTTTTCTGTTTGTTTCTCTATTAAAAAAGGTGTGTTGATCATATTGTAAGTTTACTTGTTCAGTTCTTCTCTAGTTCTTGCTGGAATGGTGAACAATTGGTTTGTGAAATTTGAGATAGAATTTTTTTTCCCCAGTCCCTAAGTCTTCTGTTTTCTGAATAATCAAAGGAGCTATTAGTTTGTTCTTTGCATTTCACCTCTTATAAACAACATTGAGTTCTGAATCTCAAACTGCTTACTTTGGTTTACAATCTTTGAAATTTTGCTATTCCTGGCCGAGTGCACTTAATGTCGGAGGAACGATTTAGGATGTTCACTTACTGTTGGTCGTCGGGCTAGGTAAGCATCTAATGCATTCATTGATCTTTTAATTCAAATAGTTAACATAATGTGTATTTATGCTATATATTAATAGTCATTGCATTGGTCCACACCAAAAATCCCAGTGTTGCCTTTTCCTTAACTCGAAAGGCGATTGTAACACTTTGTAGCTTTATATTTACATTGTACATTAGACAGACATCTCAAGTCTGTTTGAAGCATTTAAGATCTATCTGCACTCTAGTCATTTTGGCATCCTTTTCTGCTACTTTGTCATATGCCTTTTCTGATATCTACTATAGAATGTGCTCGTTTCATGAGCTTATATACTTGTTCAAGGCGGTATACGATCAACATTCTCCTATGGGATATCTTATTTGGTTCTAGTACCGCTCCTGAGCTCTCCCTTTGTAGCATTTGAGTTCTATGACAATTGTTTACCAAGTATCCATCTGCAGGTTGCATTTGACATCAATGCTGAGAAGAACAACCTTTGGAGAGATCTCTATTTTCTCACATGCATGTGTTTATGAGCTTTACATGGGTAATGTTGATCTTTACTTCTCTCTTAGTCAGGTCAGGAAGTCGATCTCATTTTTCGACATTTATTTCCTTTGTTCTTGTCCTACTACGCATCGTTACATCATCCACTCTGCTTTCATATGCTTGAAAAAACTTTTAGGATATGACAGTAAACGAGCATGTATATCTTTTCTTGAGTCACCTCTGTTAGATCTGGCATATCATTTATACACACAGTTATAGTCCGACCGTTGAGCCTATCATGTCATAAGTTCAAAGCATGTGCTAAATGAGTCAAGGTCGGAGTTTCTCAATGAATGCCGGCTTCAGTTTTCTCTAGCAAAAAGGTAAGAGTATGGAGTTTATTGTTGCCCTTTCTTTAGGAGTTGAAAACATTCTCAATTCTGAGAGAAAATTTGGGTAATGAAGCTTCTAATAGTTCTATAAAGACTCAGCAGGGAAAGGGCCAAAACCAAAACAGGAACTCAGTATCCATTTTATTGCCATACACACAGGAATTTGCTGTTTGATTTTGATGAAATTTTGTATTATTTCAAGTGTTTATTGTCATTAAAAGCTTGCTCTCTCATCATCTGTTTTGCTTATGTTAACATCCTTGTTGTCATCCACGCATTGTATTTAGCTTAGCTGGAAAATTATGTAGATGAATAATTGCTATGATTACGATTTTTCAATACATCAATACATAGCTTAATAATCCTTTCATGTTAA 3025 38.78 MDPKTSSTTKQPQEVVANFLKPPEEEELIMGENKPAEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGVSLSAGLHQKLEELGGGGSSRVNWANLGRPHLAATPTGLWPSSVTGFGFQPSTAASAAAVAVAAQSATNLANETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVINPQALNQIYQQMGQPRVHQHHQHHHHHQHHHHQQPPAKDDSQDSG 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48447363 48450514 + XM_039042525.1 Bhi01g02112 24885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02112 308 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 307 IPR005333 GO:0003700
Bhi01g02112 308 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 32 307 - -
Bhi01g02112 308 MobiDBLite consensus disorder prediction 48 71 - -
Bhi01g02112 308 Pfam TCP family transcription factor 61 152 IPR017887 -
Bhi01g02112 308 MobiDBLite consensus disorder prediction 280 295 - -
Bhi01g02112 308 ProSiteProfiles TCP domain profile. 62 116 IPR017887 -
Bhi01g02112 308 MobiDBLite consensus disorder prediction 276 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02112 - - - csv:101222902 499.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02112 Bhi-Chr1:48447363 Bhi01g02114 Bhi-Chr1:48447363 0 dispersed
Bhi01g02112 Bhi-Chr1:48447363 Bhi01g02113 Bhi-Chr1:48447363 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi12g01178 . 43 260 TCP Transcription Factor Family AT5G23280 64.0 7.9e-66 248.1
Bhi07g01106 . 39 261 TCP Transcription Factor Family AT5G23280 62.4 2.3e-65 246.5
Bhi07g01576 . 57 156 TCP Transcription Factor Family AT3G47620 89.2 8.3e-43 172.6
Bhi08g02014 . 38 138 TCP Transcription Factor Family AT3G47620 82.2 2.5e-39 161.0
Bhi01g02112 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02113 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi01g02114 . 37 277 TCP Transcription Factor Family AT3G27010 58.1 9.0e-59 224.9
Bhi12g02424 . 26 254 TCP Transcription Factor Family AT3G27010 52.4 7.4e-53 205.3
Bhi12g01178 . 31 261 TCP Transcription Factor Family AT5G08330 60.9 1.1e-64 244.2
Bhi07g01106 . 9 259 TCP Transcription Factor Family AT5G08330 56.8 1.4e-64 243.8
Bhi02g00091 CCT 35 136 TCP Transcription Factor Family AT5G60970 73.8 7.0e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
198 PF03634 TCP 8.60E-31 No_clan Bhi TF