Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02244 TCTTTCTTTCTTTCTTTCTCAACAATAAATAAATAAATATTTTTCTTTATAAATTTCTTTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTTCTTTCCCTCATTAGCAACAATCTCTCCTCCTTCCAAGCTCCAACTGAACCACTTCCCTCATCAACAATTATAGAAACAATAACGATAACACTTGTCTCAACAATTATAAACATTCCGTACACAATTAGATGCTCCTCTACTTAAACAAAAACAAGGCTTCTTCATCTTTTTAGGGTTTTGTTTAATTTCGTTTGAAAATCCCACCCACCATGGGAAGAGGCAGAGTTCAACTGAAGAGAATAGAGAACAAAATCAGTCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGATGCTGATGTTGCTTTGATTGTCTTCTCTACCAAAGGCAAACTCTTCGAGTACTCCTCTGATTCCAGTATGGAGAAGATCTTAGAAAAATATGAGAGATATTCTTATGCAGAGAGACCAGTGGCCCCAAATGGAGATTCTGAATCACAGGTAAGTTGGTGTCAGGAATATCCAAAACTTACAGCCAGATTGGAAATTGTACAGAAGAACTTGAGGCATTATTTGGGAGAAGATCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATACATCACTCAAGCGCATAAGATCTAGAAAGAATCAACTAATGCAAGAATCCATTTCAAAACTACACAAAAAGGAAAGGGAATTGCAAGAGGAAAACAGGCAGCTAGCAAATAAGGTAAAAGAGAATGAGAAGGTTTTGGTTGAACGTGGACAATGCGACCTCCCAAACTTGGTTCATAATCAGCCCATTTTTGCAATGCCACCTCCCATTCCTTCTCTATCTATTGGAGTAAACCTTCGTGGGAGAGGATCAAGAGGATCAGATGAAGATGAAACAAGGCCAACAAACGACAACAACATCCAAATACCAGCATGGATGCTTAGCCATGTGACTGAAAATCCTCATAACTAACAAGCAACCACACCACCGTCTTCTCCGTTTGCAGGCAGGCAGGCGAATGGTCGTTTTCGCTGCCCTTACCACCATCATTGTCACAAATAAAATGGCCATGGGGATGGGGGGAAAAAAAGAGAAGACAAAACTGTAAAGGTTTGGTTTTTGAAGATCATGTGGGAATAATGCAAATGCCCTAACATTGTATGACAACTCCTGTTTCACATCCAAATTGGCCACCCCAATCCCAAAACCTTATTGTATTATGTAGAAGATCATTTCTCAAGACTCCAAATTAACTTTGAACTTTTGGAAGACAAATGAAATGTGGATACTTCCATTTCTCTTTTTCTA 1388 38.83 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSSDSSMEKILEKYERYSYAERPVAPNGDSESQVSWCQEYPKLTARLEIVQKNLRHYLGEDLDPLNLRELQSLEQQLDTSLKRIRSRKNQLMQESISKLHKKERELQEENRQLANKVKENEKVLVERGQCDLPNLVHNQPIFAMPPPIPSLSIGVNLRGRGSRGSDEDETRPTNDNNIQIPAWMLSHVTENPHN 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53579786 53585926 - XM_039044573.1 Bhi01g02244 25017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02244 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi01g02244 250 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bhi01g02244 250 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g02244 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi01g02244 250 PANTHER BNAA09G02740D PROTEIN 1 218 - -
Bhi01g02244 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bhi01g02244 250 MobiDBLite consensus disorder prediction 213 233 - -
Bhi01g02244 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi01g02244 250 Coils Coil 126 182 - -
Bhi01g02244 250 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g02244 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 218 - -
Bhi01g02244 250 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Bhi01g02244 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi01g02244 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi01g02244 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi01g02244 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02244 Bhi-Chr1:53579786 Bhi04g01167 Bhi-Chr4:28326432 1.18E-86 dispersed
Bhi03g00251 Bhi-Chr3:5500732 Bhi01g02244 Bhi-Chr1:53579786 3.48E-40 dispersed
Bhi03g00252 Bhi-Chr3:5500734 Bhi01g02244 Bhi-Chr1:53579786 3.32E-40 dispersed
Bhi01g02244 Bhi-Chr1:53579786 Bhi01g02245 Bhi-Chr1:53965616 2.97E-58 tandem
Bhi01g01389 Bhi-Chr1:28046262 Bhi01g02244 Bhi-Chr1:53579786 3.06E-54 transposed
Bhi12g02451 Bhi-Chr12:77158681 Bhi01g02244 Bhi-Chr1:53579786 7.61E-58 transposed
Bhi01g02244 Bhi-Chr1:53579786 Bhi08g01059 Bhi-Chr8:34581833 1.05E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
218 PF01486 K-box 3.10E-29 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02244 K09264 - csv:101218674 457.603