Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02246 AAGCCCTAAGCCTGACTTCTTCATAATATTTCTGGGTGAAGATTGGAAAATTTCAAGTTTTTAAAGCCAAAGAAGAAGAAGAAGAAGGAAGAAAGAGAGAAACAAAACCCCCCTAAAAAAAACCCCAAATCCCAAAGGAAAAAAAACCCAATTCTAATTTTTTCCCTTTCTTTTCAAAGACCTCACTAGGGTGTTTTTTTTTTCTTCTGATCCCAAAAACAGTGTTTATTTTCACAAAAATTAGCTACACATTTTAGGGTAAGAAAAAAAGAGAAAGAAAGAGGGAAATTAAAAGGGTAGGAGAGATTTAGGGTAAAAAAAAAAAACAAAAAAAATTGGGGTTTAAAAAAGAAAGAAAAGAAATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCAAATCGTGGCAAGCTCTATGAGTTCTGTAGTATTTCCAATATGCTCAAAACACTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACAAAACCGGCTAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGACTCTTCAAAGAACTCAGAGAAATCTTCTTGGGGAGGATTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCTACTAAGACTCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAAATAAAGCTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTTACATGGGAAGGTGGAGACCAAAGCATGTCATATGGTCCACAGAATGCTCAAACTCAAGGCTTCTTTCAGCCACTAGACTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACCACAGCCCCAACTCATGGCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGAAGACCAAAAGAAAAACTACCTTACTTTTGTTGCTTACATTTTTTTTTTTTTTTTGCACTATGCTACCAA 1172 38.14 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSISNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFETLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTSAVSDQITSTTAPTHGQQVNGFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53965694 53973765 - XM_039021253.1 Bhi01g02246 25019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02246 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi01g02246 246 Coils Coil 150 170 - -
Bhi01g02246 246 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bhi01g02246 246 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g02246 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi01g02246 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi01g02246 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi01g02246 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi01g02246 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi01g02246 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi01g02246 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Bhi01g02246 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Bhi01g02246 246 Coils Coil 121 144 - -
Bhi01g02246 246 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 231 - -
Bhi01g02246 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi01g02246 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02246 Bhi-Chr1:53965694 Bhi12g02451 Bhi-Chr12:77158681 3.42E-113 dispersed
Bhi09g02715 Bhi-Chr9:72787432 Bhi01g02246 Bhi-Chr1:53965694 8.35E-36 dispersed
Bhi01g02245 Bhi-Chr1:53965616 Bhi01g02246 Bhi-Chr1:53965694 7.71E-158 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
220 PF01486 K-box 3.90E-27 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02246 K09264 - csv:101208204 467.233