Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02371 AAGAAATTGGCTGGATCCGTTTAAGCTCGCTGGGCCATGTCTTCTGAATTGAAGCTCTCAGCCTCTGGTGGTGGCCAAGCACTCCTTTGCTTCGCTGTTCAACTCTCACCCTCTTCTTCATCCGCTTCTCCGCTTCAGTTTTTCACTTCACGATAGCCATGGTTGAGGGTTTTGAAACGACGACCAGAACGGGATCTGGGGTTTTGATGTAGCCGAATTGATGAGACTTGTTTGAAGATTTCATGTCTGCTCGTGTTTCTCTGACTCGATCCATGTCCTTCTTCTGATCCGGGAATTTGTTTGCTTCCCAACGAGCTCCTGCATCTTTTTTTAGGAGGCATTGTGGACGGGGAGTTCTGAGTTTGAGCTGTTTTGTGTTCCCGATCTGAGTGATCTTTGAACAGGGCGGTCGGTGGGAGGCTTGATTTTGACAGAAAGGGTGCTTGTGATTGCTTATGCTGGAGAAAGATGTCGCTTAAAAGCTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAGCGAGGAGAAGAAGGAAGTAGGCATTGGCGAAACCGGACAATGTCACATATTGCACCAGATCAAGAACCTTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAACTTGCCCCCTGAATTACTTTTAGATATCATCCGGAGAGTGGAAGAGAGTGAAACTTCATGGCCTGCTCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGAGAGTCTCCATTTCAGTGCTTCATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGTTTGGTTCCTTCGGAGGACGAAAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCTGGTACTGACTTTATCATATCTTTAGCAGCTGATGACTTTTCTCGAGCGAGTAGCACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACAAAGTTCTCGATTTATGACAGCCAGCCTCCTTGTGACCCTGCAGCTCGGCAAAATAGCCGGTCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCCAGGGTACCTGCATGTAACTACAGTGTAGGTACAATTTCTTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACAATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCATTCACATACTCTATCGACGACCATCTTTCTTCCATATTTGATTCTATGAGAAAGGATTCAGCCAAGGACTTTGGCTCAAAGATCCAATCAGAACCAGCAGTTCGGTGCTTGGATGAATCCTTGGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGTCTAAATTTCAGAGGACGTGTGACTGTGGCATCAGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATCAATCTCACAATGTTTCAGTTGAAGAGCAAGAGAAGGTAATTCTTCAGTTTGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCATTATCCGCTCTCTGCGTTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGACATCCTGTCATGAATAGCGGTCATCATCAGAAGGTAAGAAAATGCTTGAGCTTGTGGAAAAAGATACTACACAAGCAGCATTATTGACAGCTGAGAAGATGGCTATGCGATTGATATTGTCACTGAGAGTTGTTAATCTGAGGTTTGACTTGTATTTTGTATCATCACCTTAGCTATAATGCGCATACATTATTCTAAATGTCAATCCGTTGTATTATCTATGTAGATTTCTTCATGGTTACTTCCTCGTATGATGAGACATTCTGATTGGTAATGGTTTAACATTAATGTATGGTGGATTGTCCCTCA 2019 44.68 MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEPSPLELIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLVPSEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAARQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSSIFDSMRKDSAKDFGSKIQSEPAVRCLDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 57752923 57755990 - XM_039043871.1 Bhi01g02371 25144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02371 413 SUPERFAMILY Tubby C-terminal domain-like 105 413 IPR025659 -
Bhi01g02371 413 Pfam Tub family 117 408 IPR000007 -
Bhi01g02371 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Bhi01g02371 413 PANTHER TUBBY-RELATED 1 413 - -
Bhi01g02371 413 SUPERFAMILY F-box domain 50 99 IPR036047 GO:0005515
Bhi01g02371 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Bhi01g02371 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Bhi01g02371 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Bhi01g02371 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Bhi01g02371 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Bhi01g02371 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Bhi01g02371 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Bhi01g02371 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Bhi01g02371 413 Gene3D - 50 104 - -
Bhi01g02371 413 Gene3D Tubby Protein; Chain A 115 413 IPR025659 -
Bhi01g02371 413 MobiDBLite consensus disorder prediction 207 226 - -
Bhi01g02371 413 Pfam F-box domain 56 102 IPR001810 GO:0005515
Bhi01g02371 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02371 Bhi-Chr1:57752923 Bhi03g01305 Bhi-Chr3:27034614 0 dispersed
Bhi01g02370 Bhi-Chr1:57752923 Bhi01g02371 Bhi-Chr1:57752923 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
230 PF01167 Tub 2.20E-106 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02371 K19600 - csv:101205595 789.645