Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02390 CCTTTCTCTCTTACAAAACTTGTGGCCATCGACTCCGCTCCCTTCTTTGAGTGCTAATTTGACAAAAAAATCCATACCCTTTTCTTTTTTTCATCCTCTTCATTGGCTACCATGTGCTGTTTTTCACATTTATTATTGTTTATGTTAACCCAATTGTCTTCTCGAATCTCCTTTTACCCTCTCAGGCCCCGCTAATCCTACCCCATTTCTCAATTTTCTCTGTTTCTATTTCTATTTCAATCCACACCCTCTTTTTTTTTTTTTCCTCCTTTCAATTCCTTTCTCTCTCTTTCTAGTCATTTCATTCCCCATCATCGTTTTCGTTGTCAAACGTCAAAAACCCATCTGTAATGGAGCTTTAAATTCGTCTAGGAAAGCCTCAGGAACTTGTCGTTGTTGTTGTTATTGGTTTGTGAATTTTGGGTGTTTGTGTTTTCGTCGAGGGGTTTTGGTTTATTTGGGGCAAATTCTTTTTTGGGCTTTGTTTTGTTTTTGGGGATATGAAGGCGTTGTTTTTGTTGTTGTTGATGTTGTGCGGTTGTTGATTTTGTTGGGGGGAGGAAATGAGAGTGGGGAGCTTCAATTATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAGGCTGCTCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTTCCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGATCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTACGGCAGAGGGTCGAGTTTCCAGGAGATAAACCTATAAATCTTGATGATCCGTCTCCACATTCCAAGGTTCCCAATGATATTGGTAAAGTACATAATCAGCCACCGCCGCATAAAGTGACAGCAGAAGACAATCAGCAAAATCATCACCGACTATCACCTGTTCGAGAGGCTAACGATGATGGTCATGCCGAGACCGATACAAACATGGTCGATTTGAATATGAAGCCTCAAAGGGTCCATGGTCAGGCTGCTAATAATCAGGATCTATGATCATGAACAACAAGGCATGGATTTCGATAACACATCGATGCCATCGCATTCATCAATCTTCCCCTTGCATCTGATTCAACAAAGCAGAACTTGTCACGGTTGCTCGTAGTGGAAACCTACATTGTTTGTTTCAGTCGAGGGGGGCCGTACACATGGGGTGTCGAGCTTGTTTAGTATTGTAGAGAAGTGGTTGGATAGATTTGAAAGCAAAAAAGATAAGATAAAAGCAGTGCATTTTAGTGAAATTGCAGATGCTGTACTATTACAACTTTAGAGACAGACCCAGCCAGCAGTTGGTTGGGAGGGCAAGTTGGTGTTAGGATACCCCTTCTTTTGTATTTGGTTGGAAAAAAGCGGCTGCTGCTTTCATTTTACTTCTGTAGTTCAGGTGAGAACTAAAATGGATAGAGGAAGCTTCCCATTATTTACTGCGGTTGTCTTGTTTAATTTA 1597 41.95 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLDDPSPHSKVPNDIGKVHNQPPPHKVTAEDNQQNHHRLSPVREANDDGHAETDTNMVDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 58084418 58087864 - XM_039021080.1 Bhi01g02390 25163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02390 186 CDD Bbox1_BBX-like 4 47 - -
Bhi01g02390 186 SUPERFAMILY B-box zinc-binding domain 48 88 - -
Bhi01g02390 186 MobiDBLite consensus disorder prediction 139 163 - -
Bhi01g02390 186 Gene3D Classic Zinc Finger 2 96 - -
Bhi01g02390 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 - -
Bhi01g02390 186 CDD Bbox1_BBX-like 56 96 - -
Bhi01g02390 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Bhi01g02390 186 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Bhi01g02390 186 MobiDBLite consensus disorder prediction 105 186 - -
Bhi01g02390 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi01g02390 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Bhi01g02390 186 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 184 - -
Bhi01g02390 186 SMART bboxneu5 51 96 IPR000315 GO:0008270
Bhi01g02390 186 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02390 - - - csv:101208899 386.341
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02390 Bhi-Chr1:58084418 Bhi03g00888 Bhi-Chr3:16612982 1.97E-73 dispersed
Bhi01g02390 Bhi-Chr1:58084418 Bhi03g00887 Bhi-Chr3:16612977 5.53E-64 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00075 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.9 6.6e-42 169.1
Bhi04g00075 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.9e-81 300.4
Bhi02g00794 CCT 5 373 C2C2-CO-like Transcription Factor Family AT5G57660 51.8 7.0e-68 255.4
Bhi04g00075 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 9.9e-54 208.4
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 1.8e-90 330.5
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 1.2e-89 327.8
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi10g01287 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01288 CCT 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01289 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi10g01290 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.5 5.4e-87 318.9
Bhi05g01507 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01508 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01505 CCT 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01506 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 3.0e-85 313.2
Bhi05g01795 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.2 1.6e-50 197.6
Bhi05g01796 . 1 200 C2C2-CO-like Transcription Factor Family AT1G75540 55.4 6.2e-50 195.7
Bhi01g02390 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 1.3e-56 216.9
Bhi03g00888 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.9 4.2e-50 195.3
Bhi03g00887 . 1 110 C2C2-CO-like Transcription Factor Family AT2G21320 70.9 2.2e-43 172.9
Bhi01g02390 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 1.7e-57 219.9
Bhi03g00888 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.9 1.7e-49 193.4
Bhi03g00887 . 1 103 C2C2-CO-like Transcription Factor Family AT4G38960 74.5 9.0e-43 171.0
Bhi05g01795 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi05g01796 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 58.6 1.4e-54 210.7
Bhi10g01956 . 1 109 C2C2-CO-like Transcription Factor Family AT4G39070 72.5 2.1e-39 160.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004570 3 1 3 2 1 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 2 2 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
231 PF00643 zf-B_box 2.40E-06 No_clan Bhi TF