Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02444 CCTTTTTCTGTCAAAATCAAACCGCCTTTCCTCTTTGATTTAATTTCTCCTCTCTTCTTCTCCTTTAAATTCCCCACCACACACCCACTTTCCACCACCACAAATTTCCACCCGAATTCCCCTCCTCTCTCCGCTCCGCCTTCACTTTCCGGCCAACCCCTCTGCCATGAGCGGCCACAAACGAAACTTCACCACCACAGCCGCCGCCGCGGTCAGCCCCGTCGGCAGTCCCACCTCCGGCAACATCTCCGATAGCTCCACAAAAGAACAGGACAGGTTCCTCCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCTCTTCCGGCGAACGCCAAAATCTCAAAAGAAGCGAAAGAGACCGTCCAGGAATGTGTGTCGGAGTTCATCAGCTTCATCACCGGCGAAGCCTCCGACAAGTGCCAAAGGGAAAAACGAAAGACGATCAACGGAGACGATTTGCTGTGGGCGATGACTACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATGTATCTCAACAAATACAGAGAAACAGAGGAAGAGAAACATTCTTTAGCTAGACAGGACGATCCCTCCCTGTCTCCGGCGAAATCCGCCGCCGAACAGATTATTAGTGGGAAATCGGCGAATTCGGTGATGGATTTTCAGAATTTCAATTCTGGGTTTTATTCATTGGGGAATCAAAATCAAAATCAGGGGAATCAGAAGAGTTTCAATATAATCGATGGCGTTGGATTTGGTGAAAGTTTGAGGGGTTTCAATATTAATGGAGTCCATGAAAATGGAGAAGGGAATCGAGCTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGATTTCAATGGTTGAATTATAAATTTAATCTAGAAATTTAGAATTAAGTCCTTACGTATTAAAATTACAATTTCATATCGATAGAACTTTGATTTGGTTAAAATTTTCATAAAATAAAGTTTTAAATTCTAAATTTCAAACTATACTAGGTAAATTCCAATTTTTTCTAGACCAAAATTATAATTTTAACTCATAAACACGAACTACAGAAAGAGAGGGGAAAAAATCGAGATTTTCTGATGCTATTCAAGGTTTTTTTTTTTTTTTTTTTTCTTTTTTGGGTCGAATTTCGATGTCATTTTTAGATTAAATTAAGGAGATTTTATCATTATAGTCTTAATACATTTTTATGTAGGGTTTTATGAGTTAGTTTATGGGCTTTAGAAGGGA 1235 40.73 MSGHKRNFTTTAAAAVSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKMYLNKYRETEEEKHSLARQDDPSLSPAKSAAEQIISGKSANSVMDFQNFNSGFYSLGNQNQNQGNQKSFNIIDGVGFGESLRGFNINGVHENGEGNRARAMAAHLQQSSGW 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 60200847 60202081 - XM_039042220.1 Bhi01g02444 25217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02444 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 38 102 IPR003958 -
Bhi01g02444 226 Coils Coil 114 134 - -
Bhi01g02444 226 PRINTS CCAAT-binding transcription factor subunit A signature 66 84 - -
Bhi01g02444 226 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Bhi01g02444 226 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Bhi01g02444 226 Gene3D Histone, subunit A 25 160 IPR009072 GO:0046982
Bhi01g02444 226 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 20 185 - -
Bhi01g02444 226 SUPERFAMILY Histone-fold 35 137 IPR009072 GO:0046982
Bhi01g02444 226 MobiDBLite consensus disorder prediction 1 34 - -
Bhi01g02444 226 ProSitePatterns NF-YB/HAP3 subunit signature. 69 85 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bhi01g02444 226 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 185 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02444 K08065 NFYB, HAP3; nuclear transcription Y subunit beta - csv:116406241 409.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02444 Bhi-Chr1:60200847 Bhi10g01300 Bhi-Chr10:30789337 1.14E-62 dispersed
Bhi01g02444 Bhi-Chr1:60200847 Bhi11g02146 Bhi-Chr11:60103939 5.71E-59 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g00479 . 39 178 CCAAT-HAP3 Transcription Factor Family AT5G47670 67.9 1.1e-48 191.0
Bhi10g01300 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.5e-37 154.1
Bhi10g01301 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 1.5e-37 154.1
Bhi11g00479 . 37 200 CCAAT-HAP3 Transcription Factor Family AT1G21970 60.0 2.0e-50 196.8
Bhi01g02444 . 11 139 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 4.3e-37 152.5
Bhi10g01300 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 3.7e-56 215.3
Bhi10g01301 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 3.7e-56 215.3
Bhi11g00447 . 1 120 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.3 3.7e-48 188.7
Bhi01g02444 . 30 136 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 1.5e-46 183.3
Bhi11g02146 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.5e-45 177.9
Bhi11g02147 . 22 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.5 6.5e-45 177.9
Bhi07g01026 . 14 119 CCAAT-HAP3 Transcription Factor Family AT4G14540 76.4 3.6e-43 172.2
Bhi07g01026 . 1 120 CCAAT-HAP3 Transcription Factor Family AT2G38880 78.3 1.9e-49 193.0
Bhi11g02146 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.6e-48 188.3
Bhi11g02147 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 4.6e-48 188.3
Bhi10g01300 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.9e-42 169.1
Bhi10g01301 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 2.9e-42 169.1
Bhi11g00447 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 7.1e-41 164.5
Bhi01g02444 . 17 123 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 9.2e-41 164.1
Bhi10g01300 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.9e-39 157.9
Bhi10g01301 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 6.9e-39 157.9
Bhi11g00447 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 9.0e-39 157.5
Bhi01g02444 . 33 141 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.5e-38 155.2
Bhi11g02146 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.4e-36 150.2
Bhi11g02147 . 24 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 65.1 1.4e-36 150.2
Bhi11g02146 . 1 173 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.4 1.1e-63 240.4
Bhi11g02147 . 1 149 CCAAT-HAP3 Transcription Factor Family AT2G37060 78.2 2.2e-59 226.1
Bhi07g01026 . 7 168 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.0 3.6e-57 218.8
Bhi10g01300 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 3.5e-44 175.6
Bhi10g01301 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 3.5e-44 175.6
Bhi11g00447 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 66.7 6.1e-41 164.9
Bhi01g02444 . 32 137 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 1.0e-40 164.1
Bhi01g02444 . 20 134 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 5.6e-44 175.3
Bhi10g01300 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 9.6e-44 174.5
Bhi10g01301 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 9.6e-44 174.5
Bhi11g02146 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 9.6e-44 174.5
Bhi11g02147 . 7 125 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.5 9.6e-44 174.5
Bhi11g00447 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 1.7e-40 163.7
Bhi07g01026 . 27 127 CCAAT-HAP3 Transcription Factor Family AT2G13570 72.3 1.9e-39 160.2
Bhi10g01300 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 1.4e-51 200.3
Bhi10g01301 . 1 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 79.4 1.4e-51 200.3
Bhi11g00447 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 6.7e-49 191.4
Bhi01g02444 . 28 133 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 2.2e-44 176.4
Bhi07g01026 . 27 139 CCAAT-HAP3 Transcription Factor Family AT5G47640 75.2 8.5e-44 174.5
Bhi11g02146 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.1e-43 174.1
Bhi11g02147 . 11 122 CCAAT-HAP3 Transcription Factor Family AT5G47640 74.1 1.1e-43 174.1
Bhi11g02146 . 12 173 CCAAT-HAP3 Transcription Factor Family AT3G53340 75.4 1.3e-62 236.9
Bhi11g02147 . 12 159 CCAAT-HAP3 Transcription Factor Family AT3G53340 79.1 2.1e-60 229.6
Bhi07g01026 . 12 167 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.0 6.2e-57 218.0
Bhi10g01300 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 7.1e-45 177.9
Bhi10g01301 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 7.1e-45 177.9
Bhi11g00447 . 4 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.9 1.4e-40 163.7
Bhi01g02444 . 21 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 1.8e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010325 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 0 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
238 PF00808 CBFD_NFYB_HMF 6.80E-27 CL0012 Bhi TF