Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02468 ATGGGGAGAGTTAAATTGCAAATCAAGAGAATTGAAAATACTACGAATCGACAAGTCACTTTCTCCAAACGAAGAAATGGACTCATAAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATATTGATATCGCTCTTATTATGTTCTCCCCTTCCGGCCGCCTCAGCCAGTTCTCCGGCCGCCGCAGAATTGAGGATGTGCTTGCTCGTTACATAAATTTGCCTGATCATGATAGAGGAAGCGTTGTTCATAATAAAGAGTTTTTACTTGGGACACTAAATAATTTGAAGACAGAGAACGAGATCGCACTTCAACTTGTCAATCCTACATCAAGCAACTCCAATATTGAGGAGCTTCAACAAGAGGTTGGTACATTGAGACATGAGCTTCAACATGCAGAGCAACAATTAAGGTTATATGAACCTGATCCTCTTTCATTCACATCAAATGGTGAAATAGATTCTTGTGAGAAGAACCTGTTGGACACCTTGGCAAGGATCACCCAAAGGAAGAAAGATCTATTAAGTAGCCACTTATCTCCTTATGACCATCCCAATGGGATTCAGCTATATTTGGATTCACACGAGGGAATACCAACGTCCTTTGAAACCGATGTTGCTAATTGGTTGCCCGAAAATGGCCAGAACTCGTCTCAAATTTGTGTTGCATCTGAGTCATCCTCGATTCCTCAAAGTGGTCAATATCCAAGCACAGTTTATGATCAAGTGTCACAGGCAACAAACATTAACATTGGTGGGTGTGACATTGGAAACCCAAACGATGACGGTTATTCTCCTTGGCAACACAACTACACTACAACTCAGCTCCTCTCTTCCTTCATCCCACAAACTTCATTTCATACTTTGAAGCATGAGATTGAAGAGCCTTGTATGAATACAATTATGTCCCAACAACAAGTTGATAGCATTTCAAATGGGAACCAGTTGCCTCCAAGTGATGGAAGTGCCAATTACGATAATGGCAAGTTGCCTCAACTCAACGTGGATTAA 1008 41.07 MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSQFSGRRRIEDVLARYINLPDHDRGSVVHNKEFLLGTLNNLKTENEIALQLVNPTSSNSNIEELQQEVGTLRHELQHAEQQLRLYEPDPLSFTSNGEIDSCEKNLLDTLARITQRKKDLLSSHLSPYDHPNGIQLYLDSHEGIPTSFETDVANWLPENGQNSSQICVASESSSIPQSGQYPSTVYDQVSQATNINIGGCDIGNPNDDGYSPWQHNYTTTQLLSSFIPQTSFHTLKHEIEEPCMNTIMSQQQVDSISNGNQLPPSDGSANYDNGKLPQLNVD 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 60803153 60810701 + XM_039027436.1 Bhi01g02468 25241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02468 335 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi01g02468 335 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi01g02468 335 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi01g02468 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi01g02468 335 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Bhi01g02468 335 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Bhi01g02468 335 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 301 - -
Bhi01g02468 335 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi01g02468 335 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi01g02468 335 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi01g02468 335 MobiDBLite consensus disorder prediction 305 335 - -
Bhi01g02468 335 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Bhi01g02468 335 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 301 - -
Bhi01g02468 335 Coils Coil 115 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02468 Bhi-Chr1:60803153 Bhi07g01548 Bhi-Chr7:44525552 5.32E-30 dispersed
Bhi01g02468 Bhi-Chr1:60803153 Bhi07g01547 Bhi-Chr7:44525552 8.69E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
244 PF00319 SRF-TF 9.40E-26 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02468 - - csv:101222576 564.688