Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02593 CACTGGCAATAGAAGTCCTCAGTAGAGAACAGAAGAGGGTAAGACAAAGAGCTTCTCGTTCTCGCCACAAAGCTTCATTCTCGTTGAGCTTCAGATTAAGCTTTCTCATTTTCCTTACTTCTCACTCAAATTTTTTTCATTCTTCTTCACCAATACTCATATTTTCCCTTTCCCATTCCTCAAGGGTTCGCAGAACCCCTAAATAAGCCTCACCATGGCTGATTCCCGAGCAGGCATCGTCAAAAGTATCCGCTTAGAGAACTTCATGTGTCACAGCAACTTGTATATTGAATTTGGCGAGTGGCTCAATTTCATTACTGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGCCGAGCTAAAGGAACCCAAAGGGCAGCGACGTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATTCATGTTGTATTGCAAAATAATGGGGAGGATGCTTTCAAGCATGGAATATATGGTGATGCTATAATCATAGAAAGAAGGATATCGGAAGCCACCAGTGCCATTGTTTTGAAGGATTCTCATGGAAAAAAGGTTGCCAGTCGGAGGGATGAACTACGAGAGCTAGTAGAACATTTTAATATAGATGTTGAGAATCCATGTGTAATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTTAAGTTCTTCTTCAAGGCAACTCTTCTTCAGCAAGTGGACGATCTGCTGAAAAACATTTTTGATCAATTGAGATCTGCGAATGCACTTGTTGGTGACTTGGAATCTACCATACGACCTGTAGAAAAGGAACTAAATGAGCTGCGAGGAAAAATTAAAAACATGGAGCATGTGGAAGAAATCTCTCAACAAGTCCAGCAATTAAAGAAAAAGCTTGCTTGGTCATGGGTATATGATGTAGACAAGCAGCTTCAGGAGCAAAGTGCAAAAATAGGAAAGCTCCAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCATCAACTGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATTGAGAAAAAGACTCAAATTGCAAGCATGATGGAGAGAACTTCAGAAGTGAGAAGAATGAAGGATGAACTGCAGGAAACTCTTTCCTTGGCAACAAGAGAGAAGCTCGGACTTGAAGAGGAGCATGGCCGTAAAGTAAACTACATCCAAAAGATGGTAAAGCGTGTTAGGCTGCTTGAGCAACAAGTTCAAGATATTCATGAGCAGCACATTAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTTGAATCGGAGACTGAAGCTGCTAAGTCAACAGTAATGAGGTTAAAAGAGGAGGAGAATGCCTTAATGGAGAGTCTATACAGTGGGAGAAATGAAATAAAAAAGATTGCTGAAGAGATTGAAAGTTATGAGAAAAAGCATTATGAATTTTCTCACTCAATTCGAGAGCTAAGGCAGCATCAAACCAACAAGGTCACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGCAATTGAGAGACAACATAAAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTTCCCATCTGAATTTGGTCAATGGTGACATGTGGGCTCCTGCTGTTGAAAGTGCCATTGGGAGGTTGCTCAATGCTTTCATTGTGACTGATCACCAAGATTCTCTTCTTTTGAGAAGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCAGTGTTAAATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCGACAACCCTTTCAGTCGTTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTAGCATTTGACCAACGTATCTCAAACCTCAAGGAGGTCTTTACATTAGATGGATACAAAATGTTTTCTCGAGGTTCTGTTCAGACAATTCTTCCCCCAGTTAGAAGACCCAGAAGTGGCAGACTTTGTAGTTCCTTTGAAGACCAAATTAAAAGTCTTGAAAAAGATGCATTGAATGTAAAGCAAGAAGCTGAACAATGTAGGAAGAGGAAGAGACTTTCAGAAGAACAACTCCGGGATCTTGAAGACAACCTAAGCAATGCGAAGAGGAAGTGTCGGAGTGCGGAACGGTTTTTTATGTCCAAAAATTTGGAGCTGCAAGATTTACGGAAGTCTCAAGTTGCTGAGGCTAGTTCATTGCCTTCATCAAATGTGGATGAGCTTCATCAAGAAATTTCTAAAATTGAAGAGGAGATACAAGAGAATAAGTTGCTTCTGGAAAAGTTTCAAGTTAGGATGAAAGAAGCGGAAGCAAAGGCAAAAGATCTTAAAGTATCATTTGAGAATCTCTGTGAGTCAGCAAAAGGAGAAATTGATGCATTTGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGAACTGCATTCTGCAGAAAAGGAGAAGGATCATTATGAAGGTATTATGACTAACAAGGTCCTTTTTGATATTAAAGAGGCAGAGAGACAATATGAGGAGTTTGAGCGCCATCGTAAGGAGAGCTACAGTAAGGCTTCAATAATATGTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACAATTAACAAGGCTAAATCAGAGACTTAATAACGAGACCAGACGATGTTCTGAATCTCTTGAAGACCTGAGGATGATGTATGAGAAAAAGGAGCGTACAATTATAAGAAAACAACAGACTTATAAAAGTTTTAGAGAGAAGTTGGATGCTTGCCAGAAAGCTCTTGAGCAACGGTGGAACAAGTTTGAAAGGAATGCTAGTCTTTTGAAGCGCCAATTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGCGGACATATAAAAGTTAATTACGAGGAAAAGACCCTCTCAGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTTTCAGGTGGAGAACGATCATTTTCAACACTATGCTTTGCTTTGGCGTTACACGATATGACTGAAGCCCCATTTCGAGCAATGGATGAATTTGATGTGTTTATGGACGCTGTAAGTCGGAAAATTAGCTTGGACACTCTTGTGGATTTTGCATTGGCACAAGGCTCCCAATGGATATTTATAACGCCGCATGATATTGGCATGGTAAAACAAGGAGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTTGATCATGATGTTCTTGCTGGTGAGAGCTCAATCTGTTCAACGATTTCTGTATGATTCCCATCTTTTTTTGTTCCAATATATTTTCAACTTATTCATCCTTCTGGATAATTTACCATCTTTTATGTATATTCTCCATATTCAAACCAATTGTAGAATTAACGGTCATATCTATGAGAAAGTAGAGAAGGACAATTAATAGGTGAAAGGCAAAGAAACGCTCTTTTTGTATAGGCTTAATGTATGATGTACTCAACATGGTTATAATAGAAGTAGCTATTTCGGGAAA 3630 39.78 MADSRAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRAKGTQRAATLKDFIKTGCSHAVIHVVLQNNGEDAFKHGIYGDAIIIERRISEATSAIVLKDSHGKKVASRRDELRELVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFDQLRSANALVGDLESTIRPVEKELNELRGKIKNMEHVEEISQQVQQLKKKLAWSWVYDVDKQLQEQSAKIGKLQDRIPICRAKIDHQLGLAEKLRERFIEKKTQIASMMERTSEVRRMKDELQETLSLATREKLGLEEEHGRKVNYIQKMVKRVRLLEQQVQDIHEQHIRNTQAEESEIEEKLKELESETEAAKSTVMRLKEEENALMESLYSGRNEIKKIAEEIESYEKKHYEFSHSIRELRQHQTNKVTAFGGDRVIQLLRAIERQHKRFKKPPIGPIGSHLNLVNGDMWAPAVESAIGRLLNAFIVTDHQDSLLLRRCANEANYRQLPIIIYDFSRPVLNIPAHMLPQTKHPTTLSVVHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRISNLKEVFTLDGYKMFSRGSVQTILPPVRRPRSGRLCSSFEDQIKSLEKDALNVKQEAEQCRKRKRLSEEQLRDLEDNLSNAKRKCRSAERFFMSKNLELQDLRKSQVAEASSLPSSNVDELHQEISKIEEEIQENKLLLEKFQVRMKEAEAKAKDLKVSFENLCESAKGEIDAFEEAERDMLQIERELHSAEKEKDHYEGIMTNKVLFDIKEAERQYEEFERHRKESYSKASIICPESEIEALGDWDGSTPEQLSAQLTRLNQRLNNETRRCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLDACQKALEQRWNKFERNASLLKRQLTWQFNGHLRKKGISGHIKVNYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFALALHDMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDIGMVKQGERIKKQQMAAP 1043
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 63949951 63986677 - XM_039038905.1 Bhi01g02593 25366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02593 1043 Coils Coil 703 786 - -
Bhi01g02593 1043 Coils Coil 621 676 - -
Bhi01g02593 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 1035 IPR027417 -
Bhi01g02593 1043 Coils Coil 843 881 - -
Bhi01g02593 1043 CDD ABC_SMC6_euk 9 161 - -
Bhi01g02593 1043 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 4 1043 - -
Bhi01g02593 1043 Gene3D - 9 259 IPR027417 -
Bhi01g02593 1043 SUPERFAMILY Smc hinge domain 416 604 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Bhi01g02593 1043 Gene3D - 791 1040 IPR027417 -
Bhi01g02593 1043 Coils Coil 795 815 - -
Bhi01g02593 1043 Coils Coil 355 389 - -
Bhi01g02593 1043 Coils Coil 333 353 - -
Bhi01g02593 1043 Pfam RecF/RecN/SMC N terminal domain 9 1037 IPR003395 -
Bhi01g02593 1043 Coils Coil 305 325 - -
Bhi01g02593 1043 Coils Coil 277 297 - -
Bhi01g02593 1043 CDD ABC_SMC6_euk 949 1043 - -
Bhi01g02593 1043 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 4 1043 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02593 K22804 SMC6; structural maintenance of chromosomes protein 6 - csv:101208493 1917.12
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02593 Bhi-Chr1:63949951 Bhi03g02507 Bhi-Chr3:60230843 6.11E-36 dispersed
Bhi01g02592 Bhi-Chr1:63949951 Bhi01g02593 Bhi-Chr1:63949951 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g00709 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 68.7 0.0e+00 1354.7
Bhi01g02593 . 6 1043 Structural Maintenance of Chromosomes family AT5G07660 63.3 0.0e+00 1247.6
Bhi01g02592 . 6 1043 Structural Maintenance of Chromosomes family AT5G07660 63.3 0.0e+00 1247.6
Bhi01g02593 . 4 1043 Structural Maintenance of Chromosomes family AT5G61460 66.3 0.0e+00 1319.3
Bhi01g02592 . 4 1043 Structural Maintenance of Chromosomes family AT5G61460 66.3 0.0e+00 1319.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32