Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02623 TTTGACCAAATTTCGATTTCCACCGAGCGGCGATCCAAATTTTGCAAATCCATTTAAACGACCGTTGTCACTTTGTAAGAGACGAAACTTGCAAGAGAAGCAGTAGGCTGCGACGGGAAAGAACTCTTCACCTCTTCTTCTCAAACTCGCCATGGATTTGGACCCAGATGAGGTTTTCAGAGACGACGATGACGATCCCGACAATCCACTCTTTCAGGAAAGGGAGTCGACGAAGGAATTGGCGGTTTACTTGGTGGATGCTTCCCCTAAAATGTTCAGCACGACTTGCCCCTCCGAAGATCAAAAGCAAGAAACCCATTTTCAAGTTGCTTTGAGCTGCATTTTGCAGTCATTGAAGACGCAGATCATTAACAGAAGCTATGATGAAGTTGCTATATGCTTTTTTAACACAAGGGAAAAGAAGAATTTGCAGGATCTAAATGGTGTCTTTGTGCTTAATGTCAATGAGCGAGAAGATCTTGATCGACCGACAGCAAGGCTTCTAAAAACCATTGATGGCATAGAGGAAGTATTTATGAAAGAGATTGGAAGTCAGTACGGTATTGTTTCAGGTTCTCGTGAGAACTCTCTTTACAATGCTTTATGGGCAGCGCAAGCACTGCTGCGGAAAGGATCTGCAAAGACAATTGATAAGCGGATTCTTTTGTTTACAAATGAAGATGATCCGTTTGGAAGTATCAAAGGTGCTACTAAATTTGATTTGATAAGAACTACATTACAGAGGGCTAAGGATGCTCAAGATCTCGGCATTTCAATTGAACTTTTCCCGCTGAGTTGCCCTAATGAGCAGTTTAATCTCTCTCTTTTCTATGCTGATTTGATTGGACTAGAAGGGGGGGAGCTTGCTCAATTTTTGCCTTCGGCAGGAGATAGATTACAAGATATGAAGGATCAACTGAAGAAACGAATGTTCAAGAAACGTATAGTCAGGAGACTCAAATTGTCTATCACCAATAAATTGTCAATTGATGTTAATAGTTATGCATTGATTCGTCCCACCCTTCCTGGAGCAATCACTTGGCTTGATTCTATCTCAAATCGTCCACTGAAGACAGAGATGTCATTCATTTGTGCGGATACAGGTGCATTATTTCTGGAACCTTCAAAGCGATTTCAGCTTTATAGAAATCAGGTAATTAAATTCTCTGGGGAGGAGTTATCTGAAATCAAGAGAGTATCTGCTGGACATCTTCGGCTTCTAGGTTTCAAGCCATTGAGTTGCTTAAAAGATCATCACAATTTACGTCCATCAACATTCTTATATCCTAGTGATGAGGAACTGGGTGGTAGCACTTGCATCTTCATTGCCCTCCACAGGTCCATGGTGAAGCTCAATCGTTTTGCAGTTGCGTTTTTTGGTAGTCCATCTCGCCCCCAGCTAGTTGCTCTTGTGGCCCAAGATGAGATCATTACTGCTGGGGGACAGGTTGAGCCACCAGGAATGAACATGTTATATCTGCCTTATGCTGATGACATCCGACATGTTGAGGAGCTTCATCCGGATCCAGACATTGCACCTAGAGCGACTGATGATCAAGTAAAAAAGGCTGCTGCTTTAATGAAACGCATCGACTTGAAAGACTTTTCAGTTTGCCAGTTTGCCAATCCTGCCTTGCAGAGACATTATGCAGTATTGCAGGCTTTAGCCCTGGAAGAAGATGAGATGCCTGAGGTTAATGACGAAACAGTCCCTGATGAAGAAGGAATGTCTAGACCTGGGGTGGTAAAGGCATTAGAAGAATTCAAACTATCGGTTTATGGGGAAAATTACGAGGAGGAAGCTGAAAAAGAAAAAGTGAGTGAAGCTTCAAAAAAGAGAAAAGCAGTATCTGAGACTGCTTCTCAAAAGTGTAAGGAATATGACTGGGCTGACCTTGCAGACAATGGAAAGTTGAAGGAATTGTCGGTTGTCGAGTTGAAGTATTATTTGACAGCACATGATCTTCCTGTGTCTGGAAAGAAGGAAGCCTTGATAAGCAGGATACTATCACATATGGGAAAGTAATGCAGTTGAGACAAAATCCTTCACAGTCTTCTTCTATGCCTTGTAACATGTAGAATGAAAGAAATTTTTTGCTTCTTCTGGGATGGGGAACAAGATTTGTTTATTATCATTATTTTCTTTATTTTTGGAGAAAAGAAAAAGACTACTCTTAAGTTAGCTTAGGACACTTGCAAAGTACAAACTATCACGTTGCCAAGAAACAGAGGTCTGAACTGGTTTTGGAGCCATTTTAAAAAGTATTATGAGTGAAAAAAAATGGTTTTTATTTATTTTATTTA 2304 40.93 MDLDPDEVFRDDDDDPDNPLFQERESTKELAVYLVDASPKMFSTTCPSEDQKQETHFQVALSCILQSLKTQIINRSYDEVAICFFNTREKKNLQDLNGVFVLNVNEREDLDRPTARLLKTIDGIEEVFMKEIGSQYGIVSGSRENSLYNALWAAQALLRKGSAKTIDKRILLFTNEDDPFGSIKGATKFDLIRTTLQRAKDAQDLGISIELFPLSCPNEQFNLSLFYADLIGLEGGELAQFLPSAGDRLQDMKDQLKKRMFKKRIVRRLKLSITNKLSIDVNSYALIRPTLPGAITWLDSISNRPLKTEMSFICADTGALFLEPSKRFQLYRNQVIKFSGEELSEIKRVSAGHLRLLGFKPLSCLKDHHNLRPSTFLYPSDEELGGSTCIFIALHRSMVKLNRFAVAFFGSPSRPQLVALVAQDEIITAGGQVEPPGMNMLYLPYADDIRHVEELHPDPDIAPRATDDQVKKAAALMKRIDLKDFSVCQFANPALQRHYAVLQALALEEDEMPEVNDETVPDEEGMSRPGVVKALEEFKLSVYGENYEEEAEKEKVSEASKKRKAVSETASQKCKEYDWADLADNGKLKELSVVELKYYLTAHDLPVSGKKEALISRILSHMGK 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 64926470 64943494 + XM_039043730.1 Bhi01g02623 25396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02623 624 CDD vWA_ku 28 259 - -
Bhi01g02623 624 Pfam SAP domain 588 621 IPR003034 -
Bhi01g02623 624 Gene3D SAP domain 562 624 IPR036361 -
Bhi01g02623 624 CDD KU70 264 539 - -
Bhi01g02623 624 Gene3D - 446 546 - -
Bhi01g02623 624 Gene3D - 264 445 IPR016194 -
Bhi01g02623 624 Gene3D von Willebrand factor, type A domain 28 260 IPR036465 -
Bhi01g02623 624 PIRSF Ku70 3 624 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Bhi01g02623 624 TIGRFAM ku70: ATP-dependent DNA helicase II, 70 kDa subunit (ku70) 27 622 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Bhi01g02623 624 SUPERFAMILY SPOC domain-like 264 544 IPR016194 -
Bhi01g02623 624 PANTHER KU AUTOANTIGEN DNA HELICASE 2 624 - -
Bhi01g02623 624 SUPERFAMILY SAP domain 576 622 IPR036361 -
Bhi01g02623 624 SUPERFAMILY vWA-like 28 263 IPR036465 -
Bhi01g02623 624 Gene3D Ku70, bridge and pillars 289 350 IPR027388 -
Bhi01g02623 624 Pfam Ku70/Ku80 beta-barrel domain 274 471 IPR006164 GO:0003677|GO:0006303
Bhi01g02623 624 PANTHER X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 6 2 624 IPR006165 GO:0000723|GO:0003677|GO:0003684|GO:0005634|GO:0006303|GO:0042162|GO:0043564
Bhi01g02623 624 MobiDBLite consensus disorder prediction 1 22 - -
Bhi01g02623 624 ProSiteProfiles SAP motif profile. 588 622 IPR003034 -
Bhi01g02623 624 SMART ku_4 317 460 IPR006164 GO:0003677|GO:0006303
Bhi01g02623 624 Pfam Ku70/Ku80 C-terminal arm 484 575 IPR005160 GO:0003677|GO:0003678|GO:0006303
Bhi01g02623 624 SMART sap_9 588 622 IPR003034 -
Bhi01g02623 624 Pfam Ku70/Ku80 N-terminal alpha/beta domain 32 265 IPR005161 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02623 K10884 XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1 - csv:101207694 1137.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02621 Bhi-Chr1:64926467 Bhi01g02623 Bhi-Chr1:64926470 0 dispersed
Bhi01g02622 Bhi-Chr1:64926468 Bhi01g02623 Bhi-Chr1:64926470 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1094 . . . . . Bpe14g01051 . . . . . . . . . . . Bhi01g02623 . . . . . Lcy11g1238 . . . . . . . . . Cone18ag0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010821 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 32