Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02693 TGAGAGAGATGATATCAAAGAAGGCATAGGAGAGCCCAATTAACCATCTTGATCAGCCAATTTGCGGCTTCCAAAAAGCAAAATTTTGGAACTTGAGCGTGGAAGGATGGACCCTTATTAGATTGGATTGTTCTACTTCTACCCATTACCATGATTTTTGCTTGTCCTATTCGAACTCCGGCGTTTTCCATTACATTTGCGCGAAGAATTACATGCAGCGGCATGTCGAAAGGAAGTTTATCTTCCTTGCCAACAAGCTCAAACGAAGTCCCTCCAAACCCAGGTGTTAAGTCCTCCAATGGCGTTTCTGAGTCTGAAACTCGTGTATTTGTGAGGAGAAGAGTGAAAAAGAATGCTGAAGGTCAAGTTAGCGGGCTTGAAGTCGAACCTAAAGTCGACGCTAAACGCTGCTGCCCTCCTAATATTGAAGATTTTGCATTCAAAAGAACAAAGGATTCCCCTGGATCAAGGAAGTCAAAGCTTCCTCTAGATCCCCTTCTCAACGGAATTGAAGTTTCTAATCCAACTAGACAGAAAGGCATTGCAGAAGGAGGTAAACCACCTGTTAATTGGGAAAAAGTCCTTGAAGGAATTCGGAAAATGAGATCCTCTGAAGAAGCTCCAGTAGATACCATGGGATGTGGGCAAGCTGGTAGTACTCTTCCTCCCAAGGAAAGAAGATTTGCTGTTTTGGCATCTTCTCTTCTCTCAAGCCAAACCAAAGACCACGTGACTCATGGAGCAGCATTGCGTCTCCAAGAAAGTGGTCTTCTTACTGCTGATGCGATGGACAAAGCTGATGAAGCAACCATTAAAAGCTTGATTTACCCGGTTGGATTTTATTCTACAAAGGCTAAGAATTTGAAGAAGATTGCAAAAATATGTCTTATGAAGTATGGTGGGGACATACCTAGATCATTGGAGGAGCTACTAATACTACCTGGGATAGGCCCTAAGATTGCACATTTGATCATGATTATGGCTTGGAACGATGTTCAGGGGATATGTGTGGATACTCATGTGCATCGCATTTGCAATCGGCTTGGATGGGTGTCTGGGAAAGGCTCAAAACAGAAAACATCCACTCCTGAAGAAACTCGAGTGGCATTAGAACTGTGGCTGCCAAAAGAAGAATGGGTTCCAATTAATCCTCTTCTGGTTGGATTTGGACAGACTATTTGCACTCCTCTTAGACCTAAATGTGGAAATTGCAGTGTTAGTGACCTGTGTCCATCTGCATTCAAGGAGTCTTCAAGCCCATCTCCCAAATTAAAGGGTTCAAGTTCTACCAAAAAGCTATGATCATCTTCTTGAATGAATTAATATATGTGCCAGTCAAACATTTCCCCCCAAAGTCTTGCTTTTGTATCTTTTTTTGGGCTCCATAATGGTTTACAGATTTTAGAGCTTCCATTATGGTTTCTAGCACAAAGTGTTAATGGATAGATAGGTGGATATTGAAAGATCTCAATCGGCCATTGTTGTGCAGAACGAACCTTGTTATTGATGTATATCAATGTCCTAGTACATGTTTTACATCTATAATTTCATCATCATTATTAATATTTTTTGTCAAA 1577 41.28 MIFACPIRTPAFSITFARRITCSGMSKGSLSSLPTSSNEVPPNPGVKSSNGVSESETRVFVRRRVKKNAEGQVSGLEVEPKVDAKRCCPPNIEDFAFKRTKDSPGSRKSKLPLDPLLNGIEVSNPTRQKGIAEGGKPPVNWEKVLEGIRKMRSSEEAPVDTMGCGQAGSTLPPKERRFAVLASSLLSSQTKDHVTHGAALRLQESGLLTADAMDKADEATIKSLIYPVGFYSTKAKNLKKIAKICLMKYGGDIPRSLEELLILPGIGPKIAHLIMIMAWNDVQGICVDTHVHRICNRLGWVSGKGSKQKTSTPEETRVALELWLPKEEWVPINPLLVGFGQTICTPLRPKCGNCSVSDLCPSAFKESSSPSPKLKGSSSTKKL 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 66717365 66726227 - XM_039022261.1 Bhi01g02693 25466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02693 383 Gene3D Hypothetical protein; domain 2 169 276 - -
Bhi01g02693 383 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 66 383 - -
Bhi01g02693 383 Hamap Endonuclease III-like protein 1 [NTHL1]. 137 366 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Bhi01g02693 383 MobiDBLite consensus disorder prediction 27 57 - -
Bhi01g02693 383 Pfam Helix-hairpin-helix motif 248 275 IPR000445 GO:0003677
Bhi01g02693 383 ProSitePatterns Endonuclease III family signature. 251 280 IPR004036 -
Bhi01g02693 383 SMART ccc3 343 363 IPR003651 GO:0051539
Bhi01g02693 383 Gene3D - 277 366 IPR023170 -
Bhi01g02693 383 MobiDBLite consensus disorder prediction 98 121 - -
Bhi01g02693 383 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 66 383 - -
Bhi01g02693 383 MobiDBLite consensus disorder prediction 362 383 - -
Bhi01g02693 383 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 344 360 IPR004035 -
Bhi01g02693 383 MobiDBLite consensus disorder prediction 27 56 - -
Bhi01g02693 383 SUPERFAMILY DNA-glycosylase 149 372 IPR011257 GO:0003824|GO:0006281
Bhi01g02693 383 CDD ENDO3c 178 340 IPR003265 GO:0006284
Bhi01g02693 383 SMART endo3end 186 342 IPR003265 GO:0006284
Bhi01g02693 383 Pfam HhH-GPD superfamily base excision DNA repair protein 183 311 IPR003265 GO:0006284
Bhi01g02693 383 MobiDBLite consensus disorder prediction 362 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02693 K10773 NTH; endonuclease III [EC:4.2.99.18] - csv:101212347 663.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02691 Bhi-Chr1:66717365 Bhi01g02693 Bhi-Chr1:66717365 0 dispersed
Bhi01g02693 Bhi-Chr1:66717365 Bhi12g02372 Bhi-Chr12:75019332 9.53E-11 dispersed
Bhi01g02692 Bhi-Chr1:66717365 Bhi01g02693 Bhi-Chr1:66717365 0 tandem
Bhi01g02693 Bhi-Chr1:66717365 Bhi01g02694 Bhi-Chr1:66717365 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32