Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02738 ACAAAAAGAGGCCGAAGAACAGCCTACTCCTCTTCTTCTTCTCGTTGTTGTTGGAAGTAATAACCCCAACGAAGGCGAACTTTTCTTCACGAAGTGATCTTCAGATAAGCCAAAAACGGCGAATCAGAATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGATAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCGGCTCCTAAAGCAAAAGCTATTGTTGCTGCTATTTCTAACAACCAAAACTCTGCTCCTGCTAAGGTTAATGCATCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTCTCAACCATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAATTTTAGAAGGCAATTGAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTAAAAAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATAGCGCAATATACTATGGGAGGGGTGATGCCATCGGGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTCAAGGAGGCAGAGAGAATCGCAAAGATGGCAGAAGATACAGATTCGATGCTACAGATTATAAAAGAGATGTATGAAAAATGTTCCCGTGGTGAAATTATTCTCTTGGCTTAGATCACTTGTAAGTTTAATGGCCAATCCTTTGTTGTTTTTAGTATCCGCAGTGTAAATTCTTCAATCCAGTGGAATTTTCAGCCTTCTCTGTGCCTCCAAATTCCACGTTGCTTCGTTTTTTCTTCTTTTTCGGGATGCATCGAATTAATTATAGTTTGGTATACAAATATTTAACTAGATGTTCTTAAAA 1155 41.73 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAAPKAKAIVAAISNNQNSAPAKVNASADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRIAQYTMGGVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKCSRGEIILLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 67414937 67419177 + XM_039032827.1 Bhi01g02738 25511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02738 278 MobiDBLite consensus disorder prediction 88 114 - -
Bhi01g02738 278 SMART sant 4 59 IPR001005 -
Bhi01g02738 278 SUPERFAMILY Winged helix DNA-binding domain 111 193 IPR036390 -
Bhi01g02738 278 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi01g02738 278 SMART h15plus2 112 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi01g02738 278 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 277 - -
Bhi01g02738 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Bhi01g02738 278 Gene3D - 111 198 IPR036388 -
Bhi01g02738 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bhi01g02738 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Bhi01g02738 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bhi01g02738 278 MobiDBLite consensus disorder prediction 1 27 - -
Bhi01g02738 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Bhi01g02738 278 CDD SANT_TRF 6 56 - -
Bhi01g02738 278 Gene3D - 8 87 - -
Bhi01g02738 278 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02738 K09422 MYBP; transcription factor MYB, plant - csv:101202785 521.546
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02738 Bhi-Chr1:67414937 Bhi11g01127 Bhi-Chr11:32919601 2.44E-38 dispersed
Bhi10g00882 Bhi-Chr10:17969748 Bhi01g02738 Bhi-Chr1:67414937 2.97E-06 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01127 . 1 295 Single Myb Histone (SMH) Gene Family AT1G49950 66.2 4.2e-82 302.4
Bhi11g01126 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 60.8 1.1e-77 287.7
Bhi11g01125 . 1 326 Single Myb Histone (SMH) Gene Family AT1G49950 60.1 3.1e-77 286.2
Bhi11g01128 . 1 326 Single Myb Histone (SMH) Gene Family AT1G49950 60.1 3.1e-77 286.2
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 4.4e-63 239.2
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT1G49950 53.8 4.4e-63 239.2
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.0 2.8e-65 246.5
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT5G67580 53.0 2.8e-65 246.5
Bhi03g01051 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.2 2.1e-57 220.3
Bhi03g01052 . 1 246 Single Myb Histone (SMH) Gene Family AT3G49850 51.2 2.1e-57 220.3
Bhi01g02738 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 52.0 2.0e-68 256.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
263 PF00538 Linker_histone 2.20E-10 CL0123 Bhi TF