Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02812 ACAGAGCCCTCCATCCTTCCCTTCCTCCTTTCATTTTGTTGTGTATATGCAAAAAGCCTTTTTTTGGAGAAAAGAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAGTAATTTGGTTTCCCTCATTTTTCTTCTCCCTTTCCCCTCTTCCAAGAACTTTCTCCTTTTATCTCCCCCACTACAATCAATCTCTCCTTCTTCTTCTTCATCCGATCTATTTTCTCAATCTTTATTCTTCAATTTCTCTTCGTGGGTATTGATTTTCTAATTCCTTTTGGGGATTTTTTCTTCTTCGTCGTCGTCGTCATCATCAGCGCAGATGAGACCCCTCCAGCCGCTGCCTCAGGGTACGAATCCTCCCACCGATCGTACCCGTCGTCGTCCGAATCTCAATCTTCATCTTCCGCAGCGGGACAATACGTCTTTGGCCGTTCCTCTCCCTTTACCTCCCACCTCCTCCAACTCTGCGCCTCCTCCTTCCACCAGTCAACTCCACAACGCCAACCGCCCGCCGGACCCGCTACCTCAGCAGCGTCAGGCTTTCAGCCTTTCCGAGTTTGAGCGAGTGAGCCGAATCGGAAGTGGATGTGGAGGCACCGTTTACAAAGTCGTTCATCGTCCCACCGGCCGTGTCTATGCTCTCAAGGTCATTTACGGTAACCATGAGGATGCGGTTAGGCTTCAGATGTGTCGCGAGGTCGAGATCCTTCGTGACGTTGACAATCCCTATGTGGTCAAGTGTCATGATATGTTCGATCATAACGGCGAAATCCAGGTTCTTCTTGAGTATATGGATCGGGGGTCTTTGGAAGGAACCCACATCCCTCAAGAACACCATCTCTCTGATTTGGCTCGGCAGATTCTTAGCGGTCTCGCTTATCTCCATAGCCGCCGTATCGTTCATCGCGACATCAAACCCTCGAATCTCCTCATCAATTCACGAAGGCAGGTTAAGATCGCTGATTTCGGCGTTGGTCGAATCTTGGAACAGACTATGGACCCTTGTAATTCCTCGGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATAAATTCCGATCTAAATCAGGGTCAATACAATGGGTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGTCGGTTTCCTCTTGCTGTTGAGAGGCCTGGGGATTGGGCAAGCTTGATGTGCGCTATTTGTATGGCTCAGCCACCAGAGGCGCCGCCCACTGCTTCACCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAAAGAGAAGCTCGGAAGAGATGGACTGCCGCTGCATTACTGGAACATGCGTTCATAACTAGGAAAAATGGAGCAAGTCAGTACCAGAATCAGCAAGCTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCGCCTCTTCATCCTTCCAGCCTTTCTTGAGACAAAGACAGCCTTTTAATATTTTTCTCATTTTGGTTTCTTTTCTTGAATTGCTCTGTCTTCCTGAGAAGCATGACGACGCCATTATTGTCCTGTAATTTTTCTGGAATAGCCCAAGGGAATGGTAAATTATTTGCTGTTTAGATCAGTAAATCATCTGTTTTTCACGACATTTTTCAGAACAATGCAAAAATTCTGTAATCTTTTGCCGGTGGCTGAAATATCAAGCTAAGTCAAATTCGTTTTA 1678 46.07 MRPLQPLPQGTNPPTDRTRRRPNLNLHLPQRDNTSLAVPLPLPPTSSNSAPPPSTSQLHNANRPPDPLPQQRQAFSLSEFERVSRIGSGCGGTVYKVVHRPTGRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQYQNQQAHHQNLRQLLPPPPLHPSSLS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 69891858 69893535 + XM_039046418.1 Bhi01g02812 25585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02812 369 MobiDBLite consensus disorder prediction 341 369 - -
Bhi01g02812 369 SMART serkin_6 80 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi01g02812 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4 16 357 - -
Bhi01g02812 369 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 16 357 - -
Bhi01g02812 369 MobiDBLite consensus disorder prediction 1 70 - -
Bhi01g02812 369 Gene3D Phosphorylase Kinase; domain 1 58 159 - -
Bhi01g02812 369 SUPERFAMILY Protein kinase-like (PK-like) 57 354 IPR011009 -
Bhi01g02812 369 CDD PKc_MAPKK_plant_like 78 336 - -
Bhi01g02812 369 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Bhi01g02812 369 Gene3D Transferase(Phosphotransferase) domain 1 161 358 - -
Bhi01g02812 369 Pfam Protein kinase domain 80 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi01g02812 369 ProSiteProfiles Protein kinase domain profile. 80 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi01g02812 369 MobiDBLite consensus disorder prediction 51 70 - -
Bhi01g02812 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02812 K13413 MKK4_5; mitogen-activated protein kinase kinase 4/5 [EC:2.7.12.2] - csv:101219669 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02812 Bhi-Chr1:69891858 Bhi08g01328 Bhi-Chr8:40376514 1.50E-96 dispersed
Bhi01g02812 Bhi-Chr1:69891858 Bhi06g01629 Bhi-Chr6:46699942 5.65E-66 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01848 CCT 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi02g01847 . 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.8 4.4e-136 481.9
Bhi06g01629 CCT 27 351 MAP Kinase Kinase Gene Family AT4G26070 66.6 2.7e-125 446.0
Bhi06g01688 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi06g01689 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.3 3.9e-108 389.0
Bhi02g01848 CCT 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi02g01847 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.3 6.0e-133 471.5
Bhi06g01629 CCT 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.7 7.1e-118 421.4
Bhi06g01688 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi06g01689 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 3.2e-110 396.0
Bhi11g01603 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01601 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi11g01602 . 37 518 MAP Kinase Kinase Gene Family AT5G40440 79.0 2.1e-227 785.8
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 66.3 1.2e-126 450.7
Bhi08g01328 . 46 319 MAP Kinase Kinase Gene Family AT1G51660 55.8 1.6e-83 307.4
Bhi01g02812 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 68.9 2.4e-129 459.5
Bhi08g01328 . 44 311 MAP Kinase Kinase Gene Family AT3G21220 54.9 5.3e-84 308.9
Bhi06g01688 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi06g01689 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 83.7 2.2e-170 595.9
Bhi02g01848 CCT 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi02g01847 . 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.4 6.7e-119 424.9
Bhi06g01629 CCT 1 340 MAP Kinase Kinase Gene Family AT5G56580 56.4 6.3e-109 391.7
Bhi08g01328 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.4 6.7e-107 384.8
Bhi01g02812 . 69 335 MAP Kinase Kinase Gene Family AT1G18350 51.8 2.7e-76 283.1
Bhi08g01328 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.1e-80 295.4
Bhi08g01328 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 66.8 5.7e-114 408.3
Bhi01g02812 . 76 335 MAP Kinase Kinase Gene Family AT1G73500 52.5 7.2e-77 285.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87377 PF00069 Pkinase 2.10E-60 CL0016 Bhi PK