Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02879 AATTTCAATCACCCATTCAATTCATTCTATTTGGAAATTTCCATTTCTCTCTCTTTCAATCTCCCCTCAAAATTCCTTCATACTTTTGATCCTCTGGAGATCTTTCGCGGATTCTTACAGTACGCGCTCACCTCTGTTCTTCTTCTTCGCCTCCTTCGGTCCGTTAGTTTCCATGTAAATGGTCAACTTGAACAATAGCTCAGGCGATGACTATGCAAGTCTGACTCAAGAGCGAGGCTTCACACAATGCAGTTGTTACCAAATCATGATGAAAATAAAGATGATATTCTGGAACGTGCGCCCATTTTAAGTCACTTGGATTTTCTGCCACAGTCTGTAGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTGTTGGGAGAGAGAGTTCTGTTAGTGATGATGATTTACACAATCTCAATGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGCCGTATATGCCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGTTGGTGGTTGAGACTGAAGTTCCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATAGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGGTTCTATGCCATGGCTGTGTTGGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCAAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTAATCTGAAATTGCTGAATCCATTGTGCACTTCACTTCAAGTTACGATTGATCTGGTGGATGTACTTTTGAGCTTGACCAAAGCAAGCAAATTTATTGCTGAAATGTTGCCCAATTTGCAAGCAAGAAAGAAGAAGAGTGGTTCCGAACTGTACATGGAACTGACGTGTTTGTTTCCTTCTGGTTTATCCAAGCGGTCTGTTTGAACAAATAAATGCAATGAAAAGGCATTAATATTTGAGAAGAAAATTCTGCAAGGAGTCGCTTCCTGGTCAGACACGGATTTTGCTGTATAAATGATTAAATGGACATTTTAGATGATGGGGAAATTACTCCCATCCTTCCTTGCTCCCGCTTACCCCTGAAGTTTTATTCACATTTTACTTATCGTTTTGGATTTGTATTTATTTGTTGATAAAATGTGAATTGTTTAAATTAGTAGATTAAATCGTACATTATATAATTTATATTCTGAAA 1508 39.92 MQLLPNHDENKDDILERAPILSHLDFLPQSVGSSSSAEIAEIIAVGRESSVSDDDLHNLNVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDQEHNKNVPELDPSHVMELRMLGLY 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 71482006 71486798 + XM_039028175.1 Bhi01g02879 25652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02879 262 PANTHER OS02G0132300 PROTEIN 2 261 - -
Bhi01g02879 262 SUPERFAMILY RING/U-box 70 126 - -
Bhi01g02879 262 Pfam RING-variant domain 75 122 IPR011016 GO:0008270
Bhi01g02879 262 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 261 - -
Bhi01g02879 262 CDD RING_CH-C4HC3_MARCH 75 123 - -
Bhi01g02879 262 SMART ringv_2 74 123 IPR011016 GO:0008270
Bhi01g02879 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 127 IPR013083 -
Bhi01g02879 262 ProSiteProfiles Zinc finger RING-CH-type profile. 67 129 IPR011016 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02879 Bhi-Chr1:71482006 Bhi03g01231 Bhi-Chr3:25261354 8.96E-12 dispersed
Bhi01g02879 Bhi-Chr1:71482006 Bhi01g02880 Bhi-Chr1:71482010 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02879 - - bhj:120075028 533.102