Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02979 AAAAAAAAAAAAAAAAAACTCACTAAAACCAAGTTGTACAACTCGTTGTTGGATTCGATGGAATCACACTCCCCAATCAACCACCACTTCTTCCTCAGCCTTTCTTCTCCTTCACCATCAAAATCTTGAGACAGCTTTCCACAGCCATAACCACTGTAAAATCAACAATCCCCTCGTCATGACCGAGCCGGATTCCGATCACCCATCTCCCCTTTTCCCCAAGTCCACCGCCCACCGTTCCACTTCCGACGACCGGACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTTGCTTCCAATCCCATGTCCCCTTTTCTCCTTTCAACCTCCGATCATCTTGCTTCCCCTCTTTGGGCCTTCTCTGAAGCTGATGATGATGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTCACATTCTGTACCGCAAAAGCCAACCGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCATCTTCATCATGGGGACTATTGCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCCGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACCTCAGGGCAACCGTTCGTCCTTGATTCACAGAGCAATGGACTTCATCAGTATAGGATGGCCTCATTGACGTTTATGTTTTCCTTGGACGCTGACCAGGATGGATATCTTGGGCTCCCTGGTCGTGTTTTCCAACAAAAATTGCCAGAATGGACTCCAAATGTGCAGTACTACTCAAGCAAGGAGTATCCACGACTTAGTCACGCTCTAAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCAGGGCACTCTTGTCTTGGTGTTCTCGAGCTAATCATGACCTCACCGAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTTAAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGAATAATCAGATACAATCTTGGCAATGCTTTTCAAACCAGATTTGCAACGAGGGTCGTCAAAATGCACTGGCCGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCAATGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCCGCAACTGAAGTAGCATCATATGTTGTTGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCATTTTTATCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGATTGAAGAGCTGTTTTTCGATCTGCTTACGAAGCACATTTACTGGAGACGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAAAAGACTTTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTTGAGGACAAGGACGGACTTGTTGAGATTATTCAAGCATCGAGAAATGGAGGATTTGAATCGAGATTTGAATATATTCAAATTCCAACCCCCGTGGAATTGCCACCTGCGTCTGATGCCATGCCGAAAGCAGTAGAGGTAGTTGCATTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCTCCGAAGGATGAAAACAATAGTGCTTGGGATGGGGAAAGCCACAATCCCGTTCCTTGTCCACAGAATAAGGAAGTCAAAAAGCCGTCCGAAAGGAAGCGTGGAAAGGCAGAGAAATCGATTAGTCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACCATGAAGCGTATCTGTAGGCAGCACGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTGAACCGCTCACTTTCAAAGCTAAAGCGTGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTCGGAATTTCTTCTCTGGCTACAAGTCCACTTCCTGTTACAGTTAGCTCGAGTTCTCATCCTTTAACTCCGGAAGGGTCTAACCAGCAAAACTTTGTTGCTTCTCAACCATCTGATTCTCAATATAAGGAAACAAACACCTCAGAAGCACAGACAAATGACACACAAGCTAGATTGGAAGATCAATTACATAGAGGAGTGTTGAGTCCAGAAGAACCAATTCACGATCAGAACGGATTTCTGCTGAAGTTTGGAAATGGTTTGAACAATTTTAGAGCAGGGAGTGTATCACGAGAAGAGAGTGCCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGATAGTGCCCTAGCAAATAATCTCATTTCTATTCCTCAGCATGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAGCATTCCATACAATCGATAAACTGAATATATCCACACCTGCTTGTCCAATCCCGGATACACTCGTGATGGTTGAGCCCGAGGAACCATTTGGAGGAATGCTGATCGAGGATGCAGGAAGTTCTAAGGACTTAAAAAATCTTTGCGCTTCTGTCGCTGACGCTGTTCTTGATGAGCAAGTACCTGAATTTTGTTGGTCCAACCCTCCTGATATAGCTCTGAGACAACCTATGGACTCTGTTTGTCACACAGTCCCTCATATATCACTTAGGCAAGAACCTAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGATTTCGAATTCCCTTGAGTTCTGGTATTGTAGAGTTAAGAGAAGAAGTGGCCAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCATGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAGTCATCCGGTAGCAATATAATAAGATTGTCAGTTCATGATATAAATGTCAATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGAGAATTCGAGTTGTGGAAATTGAAAATTTGTCGACGTCTTGTCTCTATATATTATATTGGCAGTACTAGGAAGTGAAGATTTAGTTCTAGGTATTGATATTATTTTACTCAAACTGTATAAAATCTTTCATGTGAATTGTAGAGATTCTCTCCTCATTTGCAGTTCACCTTTTTGTTTCTTCTTCTTTGTCAAATATGATCTTCAGAGGTGGTAAGGGTGTTGAGTTTAAAATTGCAACTTGAGAGAA 3437 43.18 MTEPDSDHPSPLFPKSTAHRSTSDDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLLSTSDHLASPLWAFSEADDDDDSKFAAYACSVLGTSNSHSVPQKPTENQKFKILPVPSSSWGLLPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLDADQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALKAVNLKSSEILDHPNNQIQSWQCFSNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGRAFLSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKKHFYTLKVASGINLEDKDGLVEIIQASRNGGFESRFEYIQIPTPVELPPASDAMPKAVEVVALETLQQQSLMVHDAPKDENNSAWDGESHNPVPCPQNKEVKKPSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDSQYKETNTSEAQTNDTQARLEDQLHRGVLSPEEPIHDQNGFLLKFGNGLNNFRAGSVSREESAGTPTSHGSCQGSPANDSALANNLISIPQHEQCVRRESPEVAFHTIDKLNISTPACPIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWSNPPDIALRQPMDSVCHTVPHISLRQEPRRMTIKATYKEDIIRFRIPLSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLSVHDINVNLGSSCESTGE 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74067037 74071465 - XM_039022966.1 Bhi01g02979 25752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02979 1003 MobiDBLite consensus disorder prediction 767 787 - -
Bhi01g02979 1003 ProSiteProfiles PB1 domain profile. 908 990 IPR000270 GO:0005515
Bhi01g02979 1003 MobiDBLite consensus disorder prediction 1 28 - -
Bhi01g02979 1003 SUPERFAMILY CAD & PB1 domains 902 990 - -
Bhi01g02979 1003 MobiDBLite consensus disorder prediction 565 601 - -
Bhi01g02979 1003 ProSiteProfiles RWP-RK domain profile. 590 671 IPR003035 -
Bhi01g02979 1003 Pfam PB1 domain 909 989 IPR000270 GO:0005515
Bhi01g02979 1003 Gene3D - 906 989 - -
Bhi01g02979 1003 CDD PB1_NLP 909 989 IPR034891 -
Bhi01g02979 1003 PANTHER PROTEIN NLP8 12 1001 IPR045012 GO:0003700
Bhi01g02979 1003 MobiDBLite consensus disorder prediction 684 726 - -
Bhi01g02979 1003 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 12 1001 - -
Bhi01g02979 1003 SMART PB1_new 908 990 IPR000270 GO:0005515
Bhi01g02979 1003 Pfam RWP-RK domain 603 651 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02979 - - - csv:101212500 1949.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02979 Bhi-Chr1:74067037 Bhi01g02981 Bhi-Chr1:74067037 0 dispersed
Bhi01g02979 Bhi-Chr1:74067037 Bhi01g02980 Bhi-Chr1:74067037 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g02889 . 17 676 NLP Transcription Factor Family AT1G20640 50.6 4.4e-169 592.8
Bhi09g02889 . 15 676 NLP Transcription Factor Family AT1G76350 50.4 5.5e-169 592.4
Bhi01g02980 . 187 993 NLP Transcription Factor Family AT1G64530 51.3 2.7e-217 752.7
Bhi01g02979 . 187 1003 NLP Transcription Factor Family AT1G64530 50.7 5.7e-215 745.0
Bhi01g02981 . 116 932 NLP Transcription Factor Family AT1G64530 50.7 5.7e-215 745.0
Bhi01g02980 . 266 993 NLP Transcription Factor Family AT4G24020 54.7 6.6e-200 694.9
Bhi01g02979 . 266 1003 NLP Transcription Factor Family AT4G24020 53.9 1.4e-197 687.2
Bhi01g02981 . 195 932 NLP Transcription Factor Family AT4G24020 53.9 1.4e-197 687.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
283 PF00564 PB1 8.80E-19 CL0072 Bhi TF