Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g02980 AAAAAAAAAAAAAAAAACTCACTAAAACCAAGTTGTACAACTCGTTGTTGGATTCGATGGAATCACACTCCCCAATCAACCACCACTTCTTCCTCAGCCTTTCTTCTCCTTCACCATCAAAATCTTGAGACAGCTTTCCACAGCCATAACCACTGTAAAATCAACAATCCCCTCGTCATGACCGAGCCGGATTCCGATCACCCATCTCCCCTTTTCCCCAAGTCCACCGCCCACCGTTCCACTTCCGACGACCGGACCCCACTTATGGATTTCGATCTCGACTTGGACATTCCTTGGCCTTTGGATCAAATCCCTTCTTTTGCTTCCAATCCCATGTCCCCTTTTCTCCTTTCAACCTCCGATCATCTTGCTTCCCCTCTTTGGGCCTTCTCTGAAGCTGATGATGATGACGATTCCAAGTTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTCACATTCTGTACCGCAAAAGCCAACCGAGAACCAAAAGTTTAAGATTCTTCCAGTTCCATCTTCATCATGGGGACTATTGCCATCGGAGAATCCAGATGGGTATTGCTTAATCAAAGAAAAAATGGCACAAGCTCTTCGGTACATTAAAGAATCATCCGACCAGCATGTTCTAGCTCAGGTTTGGGCGCCTGTAAAAAGTGGTGGCAAGTTTGTACTTTCAACCTCAGGGCAACCGTTCGTCCTTGATTCACAGAGCAATGGACTTCATCAGTATAGGATGGCCTCATTGACGTTTATGTTTTCCTTGGACGCTGACCAGGATGGATATCTTGGGCTCCCTGGTCGTGTTTTCCAACAAAAATTGCCAGAATGGACTCCAAATGTGCAGTACTACTCAAGCAAGGAGTATCCACGACTTAGTCACGCTCTAAACTACAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCAGGGCACTCTTGTCTTGGTGTTCTCGAGCTAATCATGACCTCACCGAAGATCAATTATGCACCTGAGGTGGACAAAGTCTGCAAAGCTCTTAAGGCTGTCAATCTAAAAAGTTCAGAGATTTTGGATCATCCGAATAATCAGATTTGCAACGAGGGTCGTCAAAATGCACTGGCCGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCACCGAAACGTGCTCGCCAATGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGCATGGGACGGATCTGTATGTCCGCAACTGAAGTAGCATCATATGTTGTTGATGCTCACATGTGGGGTTTTCGTGACGCATGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTTTCTGGGAGAGCATTTTTATCCCACAGCTCATGTTTTTGTGGAGACATCACCCAATTCTGTAAGACTGAGTACCCTTTGGTACACTATGCACTTATGTTTGGATTGAAGAGCTGTTTTTCGATCTGCTTACGAAGCACATTTACTGGAGACGATGAGTACATTCTAGAATTTTTTCTGCCACCGAGCATTGTTGATTATCAGGAACAAAAGACTTTGTTGGGTGCATTAATGGCAACAATGAAGAAGCATTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTTGAGGACAAGGACGGACTTGTTGAGATTATTCAAGCATCGAGAAATGGAGGATTTGAATCGAGATTTGAATATATTCAAATTCCAACCCCCGTGGAATTGCCACCTGCGTCTGATGCCATGCCGAAAGCAGTAGAGGTAGTTGCATTAGAAACATTGCAACAACAATCTTTAATGGTTCATGATGCTCCGAAGGATGAAAACAATAGTGCTTGGGATGGGGAAAGCCACAATCCCGTTCCTTGTCCACAGAATAAGGAAGTCAAAAAGCCGTCCGAAAGGAAGCGTGGAAAGGCAGAGAAATCGATTAGTCTGGAGGTTCTTCAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCCACAACCATGAAGCGTATCTGTAGGCAGCACGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTGAACCGCTCACTTTCAAAGCTAAAGCGTGTGATTGAATCTGTTCAAGGGGCTGAAGGAGCATTCGGAATTTCTTCTCTGGCTACAAGTCCACTTCCTGTTACAGTTAGCTCGAGTTCTCATCCTTTAACTCCGGAAGGGTCTAACCAGCAAAACTTTGTTGCTTCTCAACCATCTGATTCTCAATATAAGGAAACAAACACCTCAGAAGCACAGACAAATGACACACAAGCTAGATTGGAAGATCAATTACATAGAGGAGTGTTGAGTCCAGAAGAACCAATTCACGATCAGAACGGATTTCTGCTGAAGTTTGGAAATGGTTTGAACAATTTTAGAGCAGGGAGTGTATCACGAGAAGAGAGTGCCGGGACACCTACTTCTCATGGTTCATGCCAAGGTAGTCCTGCAAACGATAGTGCCCTAGCAAATAATCTCATTTCTATTCCTCAGCATGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAGCATTCCATACAATCGATAAACTGAATATATCCACACCTGCTTGTCCAATCCCGGATACACTCGTGATGGTTGAGCCCGAGGAACCATTTGGAGGAATGCTGATCGAGGATGCAGGAAGTTCTAAGGACTTAAAAAATCTTTGCGCTTCTGTCGCTGACGCTGTTCTTGATGAGCAAGTACCTGAATTTTGTTGGTCCAACCCTCCTGATATAGCTCTGAGACAACCTATGGACTCTGTTTGTCACACAGTCCCTCATATATCACTTAGGCAAGAACCTAGGAGGATGACTATCAAGGCCACTTATAAGGAAGATATTATTCGATTTCGAATTCCCTTGAGTTCTGGTATTGTAGAGTTAAGAGAAGAAGTGGCCAAGAGATTGAAATTGGAGGTTGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTATTGCATGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAAGTCATCCGGTAGCAATATAATAAGATTGTCAGTTCATGATATAAATGTCAATCTTGGGAGTTCTTGTGAGAGTACTGGGGAGTGAGAATTCGAGTTGTGGAAATTGAAAATTTGTCGACGTCTTGTCTCTATATATTATATTGGCAGTACTAGGAAGTGAAGATTTAGTTCTAGGTATTGATATTATTTTACTCAAACTGTATAAAATCTTTCATGTGAATTGTAGAGATTCTCTCCTCATTTGCAGTTCACCTTTTTGTTTCTTCTTCTTTGTCAAATATGATCTTCAGAGGTGGTAAGGGTGTTGAGTTTAAAATTGCAACTTGAGAGAA 3406 43.25 MTEPDSDHPSPLFPKSTAHRSTSDDRTPLMDFDLDLDIPWPLDQIPSFASNPMSPFLLSTSDHLASPLWAFSEADDDDDSKFAAYACSVLGTSNSHSVPQKPTENQKFKILPVPSSSWGLLPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPVKSGGKFVLSTSGQPFVLDSQSNGLHQYRMASLTFMFSLDADQDGYLGLPGRVFQQKLPEWTPNVQYYSSKEYPRLSHALNYNVQGTLALPVFDPSGHSCLGVLELIMTSPKINYAPEVDKVCKALKAVNLKSSEILDHPNNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHMWGFRDACLEHHLQKGQGVSGRAFLSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKTLLGALMATMKKHFYTLKVASGINLEDKDGLVEIIQASRNGGFESRFEYIQIPTPVELPPASDAMPKAVEVVALETLQQQSLMVHDAPKDENNSAWDGESHNPVPCPQNKEVKKPSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPLPVTVSSSSHPLTPEGSNQQNFVASQPSDSQYKETNTSEAQTNDTQARLEDQLHRGVLSPEEPIHDQNGFLLKFGNGLNNFRAGSVSREESAGTPTSHGSCQGSPANDSALANNLISIPQHEQCVRRESPEVAFHTIDKLNISTPACPIPDTLVMVEPEEPFGGMLIEDAGSSKDLKNLCASVADAVLDEQVPEFCWSNPPDIALRQPMDSVCHTVPHISLRQEPRRMTIKATYKEDIIRFRIPLSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISKSSGSNIIRLSVHDINVNLGSSCESTGE 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 74067037 74071464 - XM_039022972.1 Bhi01g02980 25753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g02980 993 ProSiteProfiles PB1 domain profile. 898 980 IPR000270 GO:0005515
Bhi01g02980 993 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 12 991 - -
Bhi01g02980 993 CDD PB1_NLP 899 979 IPR034891 -
Bhi01g02980 993 Pfam RWP-RK domain 593 641 IPR003035 -
Bhi01g02980 993 Pfam PB1 domain 899 979 IPR000270 GO:0005515
Bhi01g02980 993 PANTHER PROTEIN NLP8 12 991 IPR045012 GO:0003700
Bhi01g02980 993 MobiDBLite consensus disorder prediction 674 716 - -
Bhi01g02980 993 MobiDBLite consensus disorder prediction 1 28 - -
Bhi01g02980 993 SUPERFAMILY CAD & PB1 domains 892 980 - -
Bhi01g02980 993 Gene3D - 896 979 - -
Bhi01g02980 993 ProSiteProfiles RWP-RK domain profile. 580 661 IPR003035 -
Bhi01g02980 993 MobiDBLite consensus disorder prediction 757 777 - -
Bhi01g02980 993 SMART PB1_new 898 980 IPR000270 GO:0005515
Bhi01g02980 993 MobiDBLite consensus disorder prediction 555 591 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g02980 - - - csv:101212500 1920.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02980 Bhi-Chr1:74067037 Bhi09g02887 Bhi-Chr9:75833559 2.59E-12 dispersed
Bhi01g02979 Bhi-Chr1:74067037 Bhi01g02980 Bhi-Chr1:74067037 0 tandem
Bhi01g02980 Bhi-Chr1:74067037 Bhi01g02981 Bhi-Chr1:74067037 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g02889 . 17 676 NLP Transcription Factor Family AT1G20640 50.6 4.4e-169 592.8
Bhi09g02889 . 15 676 NLP Transcription Factor Family AT1G76350 50.4 5.5e-169 592.4
Bhi01g02980 . 187 993 NLP Transcription Factor Family AT1G64530 51.3 2.7e-217 752.7
Bhi01g02979 . 187 1003 NLP Transcription Factor Family AT1G64530 50.7 5.7e-215 745.0
Bhi01g02981 . 116 932 NLP Transcription Factor Family AT1G64530 50.7 5.7e-215 745.0
Bhi01g02980 . 266 993 NLP Transcription Factor Family AT4G24020 54.7 6.6e-200 694.9
Bhi01g02979 . 266 1003 NLP Transcription Factor Family AT4G24020 53.9 1.4e-197 687.2
Bhi01g02981 . 195 932 NLP Transcription Factor Family AT4G24020 53.9 1.4e-197 687.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
284 PF00564 PB1 8.70E-19 CL0072 Bhi TF