Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g03200 ATTGATACCAAAATATCAGTCTGAATTCACACTCCGAATCACAAATCAAATCCCATTCTTAAACCTCTCCTCAACTTCATCCACTTGCTCCCCAAGGAACCTTATTCCTTTTCGTTTCCATCTTTGCTCGAACAATTTTTTTCTTTCTAATTCCAATTTCCAAAGGGGTTTTTTCTCACCTTCAACTAGCGCTGTGATTCTTGTGAAAATCAGGTAACAGGGGGAAGTTTTCTTTTTCTTTTCTGGGTTTTTCCCACAGAGTTTCAATGATGATGAATGGGATTTAGAGGATTCGAGAGAAGGTGAGAGATTTGAGGATGAAGATTCAGTGCAATGTCTGTGAGATGGCTGAGGCGACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGTGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCATCAGAGAGTTCCCCTCTCTGGTTCTTCATCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTTTGTAACTGGACATCAGCGCTTTCTGCTTACTGGTGTGAAAGTGGCGCTCGAGCCAACTGACCCTGTTGCTTGTTCTTCCATGGCTAAGTCACATTCTCGAGAGAAGTCTACTGAGATTAAAGTTAGACCACTGTCTGAAAGGGAATTCTCGATGCCTTCTCCTGGTGAACTCAGCAGAAGCTTGTCTGTACTAGGTGGATCTGAGGACTTTATGGAAAATAGAACGTTGCTTACTGGAGGCGGAGATTCTGTTTCTGGTGGCTTTTCACAGTGGCAAATGGATGAACTTATTAATCTGACTGGATTTAATCAAAACTATGGATATATGGATAACGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCATCACCAGTTTTAAGAGCTGCTGACATCGAACTGGACAATGACGATGAATGCTCGGTTCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCTCCACCCACAGCATCAGGCTTATACTGGCCAAGGAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCTGTTCTTCAGAAAAGGTTCAACATTGCTCACATAATGGTACATTCTCGAAACGAAGAAGACAGTTCTAGATGTGTGAGCTGTAGCATTGGGACTACATTGCCAGCGTTCTGAACGAACCCCAGCCCGGTTTGTTGTGTGTTTATAGGCTTTCATTACAATTGAGTTATAATAAGTGGACACGACCAAAGATTATCGCTTGAAATGTATACCTTGTAACGTAACCACTATAGTTTAGGATTTGTTACATTGATGTAGAAATAAAACCTGTGCATTAGTTGACCTTCTAGGTATTTTTTTCAGATTTATTTCAAACATCATATGGAAATGATTATGTTTCAAATCACGTTGACCTACTTGATTATTTGTAGTTTTACACAAATTATGAAGAATCAATGTTATGTCTTGGCCATTTCTAGTCCTGTACCTCTTCTTCATTGTGCATATGTAATTGACTTCTTTCCTGGTTCTGTAA 1618 41.66 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTFVTGHQRFLLTGVKVALEPTDPVACSSMAKSHSREKSTEIKVRPLSEREFSMPSPGELSRSLSVLGGSEDFMENRTLLTGGGDSVSGGFSQWQMDELINLTGFNQNYGYMDNGSSKADSGKLGDSDSSPVLRAADIELDNDDECSVQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSHNGTFSKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 80175021 80178336 + XM_039049016.1 Bhi01g03200 25973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g03200 298 Gene3D Classic Zinc Finger 1 92 - -
Bhi01g03200 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bhi01g03200 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bhi01g03200 298 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 297 - -
Bhi01g03200 298 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Bhi01g03200 298 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Bhi01g03200 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Bhi01g03200 298 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bhi01g03200 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bhi01g03200 298 CDD Bbox1_BBX-like 5 47 - -
Bhi01g03200 298 CDD Bbox1_BBX-like 56 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g03200 - - - bhj:120091143 616.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03200 Bhi-Chr1:80175021 Bhi12g02501 Bhi-Chr12:78596226 7.31E-44 dispersed
Bhi03g00888 Bhi-Chr3:16612982 Bhi01g03200 Bhi-Chr1:80175021 6.90E-25 dispersed
Bhi01g03200 Bhi-Chr1:80175021 Bhi04g00223 Bhi-Chr4:5456637 2.99E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00682 . 1 377 Orphan Transcription Factor Family AT5G61850 69.9 6.3e-124 441.8
Bhi12g02502 . 1 167 Orphan Transcription Factor Family AT1G06040 68.4 9.3e-61 230.7
Bhi12g02501 . 1 161 Orphan Transcription Factor Family AT1G06040 70.2 2.1e-60 229.6
Bhi01g03200 . 1 126 Orphan Transcription Factor Family AT1G06040 61.9 1.7e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
299 PF00643 zf-B_box 3.30E-07 No_clan Bhi TF